Sphingorhabdus sp. SMR4y: SPHFLASMR4Y_01050
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Entry
SPHFLASMR4Y_01050 CDS
T04949
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sfla
Sphingorhabdus sp. SMR4y
Pathway
sfla03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sfla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SPHFLASMR4Y_01050 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfla03400
]
SPHFLASMR4Y_01050 (mfd)
Enzymes [BR:
sfla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SPHFLASMR4Y_01050 (mfd)
DNA repair and recombination proteins [BR:
sfla03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SPHFLASMR4Y_01050 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
SecA_DEAD
AAA_30
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ASK87820
UniProt:
A0A220W4Q1
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All DBs
Position
1087680..1091111
Genome browser
AA seq
1143 aa
AA seq
DB search
MTLAGIPTGYRPLFLSRLAKESGRRTMFIATDDAAMSAVVEAARFFAPDLDIIEFPAWDC
LPYDRASPSLHTTSDRLAALARLAQPFTGSQLVVTTINAVTQRVLAPSRTRELVTHLAPG
TIVEQEKLISFLYANGFVRVDTVADSGEFAARGGLIDLFPPGAELPIRIDLFGDEIESLR
QFDPADQRTVANIDSLELLPVSEFLLDADSITRFRTGYRDLFGAIATSDALYQSISEGRR
LAGMEHWLPLLEEKLATIFDYVEKDCLILRDTAATAAAEAQFVAIADYHKNRVEADKANL
SSYRPLPPEMLYLTPEEWRTHEHDAPIHILSEFDEPESTTVLSMAVSSPRDFSPERARNE
NIYQALGSHLNSLTKTGTTAIVASYSKGSRARIFDLLKDHDVKGAVLCDDWESCLSAAPA
IALTILPLSSGFRSENLSLLTEQDIFGDRLVRKSKRRKSSDAFIEELSALSLGDLVVHLE
HGIGLYEGIVSIPVGDSPHDCVHLKYAGGDKLYVPVENIDVLSRYGEGGDSVVLDKLGGE
GWQRRKSKLKERIRAIAHELLKTAAARALQPATPARVEASEMAGFVDRFPYQETDDQQQA
IEEVLGDMASGKAMDRLVCGDVGFGKTEVAMRAAFAAAMAGMQVAIIAPTTLLARQHFNN
FEERFRPFPLKIGRLSRLVSPAEAKKTKEGLASGEVDIVIGTHALLAKSIEFQRLGLIII
DEEQRFGVTHKERLKAMKADVHVLTLTATPIPRTLQMAMTGMRELSVIQTPPVDRLAVRT
YVMPWDPVPLREALLREHYRGGQSFVVVPRIADLADIEDFFKEHAPELTYVVAHGQMPPA
TVEERMSAFYDRNYDVLLSTTIVESGLDIPSANTLIIHRADRFGLAQLYQLRGRVGRSKT
RAYAYMVTPKDRIITEKAEKRLKILGDLDSLGAGFELASHDLDIRGAGNLLGDEQSGHIK
EVGFELYQSMLEDAILEAKAKGSGLQAATDSFSPQITVDAPILIPEAYVPDLSLRMGLYR
RMNGLKTLQEIESFAAEMIDRFGDLPIQTDNLLKLMHIKMNCVKAKIAKIEMGPRGALVT
FHNDSFPNVPGLLDYVDRLKGTAKIRPDNKLFIERKWRDPKSRLHGLTQLTTGLSKLAQR
VAA
NT seq
3432 nt
NT seq
+upstream
nt +downstream
nt
atgacgctagccggtatcccgaccggttaccgcccgctctttctgtcccgactggcaaag
gaatcggggcgacgcacgatgtttatcgcgaccgacgacgcggcgatgagcgcagttgtg
gaggcagccagattctttgctcccgatctggatatcatcgaatttccggcctgggactgc
ctgccttatgaccgggcttcgccgtctcttcacaccacatcggaccggctggcggctttg
gccaggctggcgcaacccttcaccggatcgcaactggtcgtcactaccatcaacgcggtt
acccagcgcgttctggcgccgtcacgaaccagagagcttgtcacccatctcgcacccggc
accatcgtcgagcaggagaagctgatctcctttctctacgccaacgggtttgtccgcgtg
gataccgtcgcggatagcggcgaatttgccgcccgcggaggattgatcgacttgtttccg
ccgggtgcagagctgcccattcgcatcgatctttttggtgacgaaattgaaagcctgcgg
caattcgatccggccgatcagcgaacggttgccaatatcgacagcttggaattacttccg
gtatctgaatttctgttggatgcagatagtatcacccgcttccggaccggctatcgcgat
cttttcggcgcgattgcgacaagcgacgccctctatcaatccatctccgaaggacgccgg
ttggcagggatggaacattggctgccgctcctcgaagagaagctggcgaccattttcgac
tatgtcgaaaaagattgcttgatcctgcgggacaccgctgccaccgcagccgcagaagcg
caatttgttgccattgcggattatcacaagaaccgggtggaagccgacaaggccaatttg
tcgagctatcgcccgctgcctccggaaatgctgtacctcacaccggaagaatggcgcact
cacgaacatgacgcgcccattcacattctgagcgaatttgacgaaccggaatcaaccacc
gtcctgtcgatggccgtgtcctcaccccgcgacttttcaccggaacgggcgcgcaacgag
aatatctaccaggccttgggaagccatctgaacagcctgacgaagaccggaaccaccgcc
attgtcgcgagctatagcaaaggatcgcgcgcgcgaattttcgaccttctcaaagaccat
gacgtcaagggagcggtactatgcgatgactgggaatcctgcctgtcggcagcacccgcc
atagcgctgacaatattgccactatcttccgggttccggtcagaaaatctgtcgctgctg
accgagcaggatattttcggcgaccggctggttcgcaagtccaagcggcgcaaaagcagc
gatgccttcatcgaagagttgtccgcgctcagcctgggcgacctggtggttcatctcgaa
catggcatcggcctttacgaaggcattgtctcgattccggtcggcgacagcccgcatgat
tgcgtccacctcaaatatgccggcggcgacaagctgtatgtccccgtcgagaatatcgat
gttctcagccgctatggcgaaggtggcgacagcgtcgtgctggacaaacttggcggcgaa
ggctggcaacggcgcaagtcgaagctgaaggaacgtatccgtgcgattgcccatgagctt
ctgaaaaccgccgccgcccgcgccttgcaaccggcgacaccggcccgtgtagaagctagc
gaaatggccggattcgttgaccgcttcccctatcaggaaaccgatgatcagcagcaggcc
atcgaggaagtccttggcgacatggcttctggcaaggcaatggaccgtctggtctgcggt
gatgtcggtttcggcaaaaccgaagtggcaatgcgcgcggcctttgccgctgcgatggcg
ggtatgcaggttgcgatcatcgcgccgaccacgctgctcgcgcgtcagcatttcaataat
ttcgaggaacgtttccggcccttcccgttaaaaatcgggcgcctctcgcgtctggtctcg
ccggcagaagcgaagaagacaaaagagggtttggcaagcggcgaagtcgacattgttatc
ggcactcatgctctgctcgccaaatccatagaattccagcggcttggcctgatcatcatc
gatgaagaacaacggttcggggtcacccacaaggaacggctcaaggcaatgaaggcggat
gtccacgtcctcacgctgaccgccacgccaatcccgcggactttgcagatggcgatgacc
ggcatgcgcgaactgtcggttatccagactccaccagtcgatcgacttgccgtccgcacc
tacgtcatgccgtgggaccctgttccgctgcgcgaagcgctgctgcgcgaacattatcgt
ggcggccagtcattcgtggttgttccccgcatcgccgaccttgccgacatcgaggatttc
ttcaaggaacatgcccccgaactgacctatgtcgtggcccacgggcaaatgccgccggcg
accgtggaagagcggatgtcggcattttacgatcgcaattatgatgtgctgctctccacc
accatcgtcgagagcggactggatattcccagcgcgaacacgctgatcattcaccgcgcg
gatcgtttcggccttgcccagctctatcagctccgcggccgggtcggacgctcaaaaacg
cgtgcctacgcgtatatggtgacgccaaaggaccggatcataaccgaaaaagccgagaaa
aggctcaaaatcctcggcgatctcgacagtcttggcgccgggttcgagctcgcgagccac
gatctggatattcgcggagccggcaatctgctgggcgacgagcagtctggccatatcaag
gaagtcggcttcgaactgtaccagtccatgctggaagacgcgatattggaagccaaggcc
aagggctcgggactgcaagccgccaccgacagcttctctccacagatcacggtcgacgcc
ccgatattaatacccgaagcctatgtcccggacctttcactccggatggggctttatcgc
cgcatgaacggactcaaaacccttcaggaaatcgaatccttcgctgcggagatgatcgat
cggttcggcgatctgccgatacagaccgacaatttgctcaagctcatgcatatcaagatg
aattgcgtgaaggccaagattgcaaaaatcgagatggggccgcgcggggcgctggtcact
ttccacaacgacagctttccgaacgttccgggcctgctcgattatgttgatcgtctcaag
ggcaccgccaagatccggcctgacaataaattgttcatcgaacgcaaatggcgcgatccc
aagtcccgcctgcatggcctgacgcagctgacgaccggattatcgaaactggcccagcgg
gtggctgcctag
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