Sphingorhabdus sp. SMR4y: SPHFLASMR4Y_01063
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Entry
SPHFLASMR4Y_01063 CDS
T04949
Name
(GenBank) PD-(D/E)XK nuclease superfamily protein
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
sfla
Sphingorhabdus sp. SMR4y
Brite
KEGG Orthology (KO) [BR:
sfla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfla03400
]
SPHFLASMR4Y_01063
Enzymes [BR:
sfla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SPHFLASMR4Y_01063
DNA repair and recombination proteins [BR:
sfla03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
SPHFLASMR4Y_01063
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
ASK87832
UniProt:
A0A220W4T3
LinkDB
All DBs
Position
complement(1107725..1110724)
Genome browser
AA seq
999 aa
AA seq
DB search
MSERRRPSIYNIAAHGGFADALAQGLIDRFAKDAFGLARGLVILPNNRAQRALQEAFVRL
SEDGLLLPQMAVIGDLDLDESIGVALDSGELALDIPAAVDPMDRLLTLAQLIQKEIRLRD
DAILAKDALRLAREFASTLDQLNVEEISLSDLMKTEPESLDLSTHWQDSYRFFLIIAEKW
RQQLAKWQRVDQAVRRNALFDHIARSWKASPPGHFVVAAGITTSAPAIARFLETIAFMPS
GMVVLPDLDLIMPDEEWDLLGPFLPDPDSGYTKRAQETHPQYHIKLLLDRMSIARGEVMR
WPRTGESGAAAKRSRALSNAFAIPQLTVRWQTLESDERSLAGVQTVEARNSAEEAQVIAL
LAREALEDPDQRVAIVTPDRSLATRISAHLKRWDIQVDDTAGQPLAKLPEGVFFLNLLAA
VADGFPPAEFLALLKHPLVQRGEGRLSWLDQVRKLDLLLRGPRPAPGLAGIDALLRTDNY
RTKTLRAAVTPWWQSVRTMFEPMENLFASALDWPKLLDELRQLAETLTDGAVWAGPGGRE
LADLLANLQVRAEMGPIRIKADELPGYFETLMADISVRPPYGGHPRIALYGLLEARLQQS
DLVICCGLNEGSWPQAITPDPWLAPMIRKSLGLPAQERQIGLSAHDLVGAMGAKRVILSR
AHRDDSGPAIASRFLLRLKGMCGDNLKEHPQARGWLSALDQPESEPAPYARPAPEPSKEQ
RHIPISVTQVDSLIADPYSFYAKKIMGLAALDMIDADPSAAWRGTIIHDILDQWAKQDDY
APAALRERAQRFLQDPGLHPLMRSLWAPRLLEGLDWIADTLAEGRKSGREPLASEIYGKA
EIAGVELSGIADRIDRMPDGGLAIVDYKTGGAPSNKAVAEGYNLQLGLLAAIAELGGFKD
IDGEAVAFEYWSLAKKGGTDDFGHVRSPTKGRGDNIIPADAMVDHAVARFNEVADGYILG
EEPMTAKLHPEYARYADYDQLMRLEEWYGRAPTEGTGDE
NT seq
3000 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaacgacgccggccatccatctacaatattgccgcgcatggcggctttgccgat
gcgctggcccaggggctgattgaccgctttgccaaggacgctttcggactggcccgtggt
ctcgtcatattgccaaacaaccgcgcccagcgcgcgctgcaggaagcattcgtccggctg
agcgaagacgggctcctattgccgcagatggcggtgatcggcgatctcgatctcgacgaa
tcgatcggagttgcactggattccggggaactggcgctcgatattccggccgccgtcgat
ccgatggaccggctgctgacgctggcacagctgatccagaaggaaatccggttgcgcgac
gacgccatattggccaaggacgcgctgcggctggcacgcgaatttgcgagcacgctcgac
cagctgaacgtcgaggaaatttcgctgtccgacctgatgaaaacggagccggagagcctt
gatctgtccacgcactggcaggattcctaccgcttcttcctgatcatcgccgagaaatgg
cggcagcagctggcaaaatggcagcgggtggatcaggcggtgcgccgcaacgccctgttc
gaccatatcgccagaagctggaaggcatcgccacccggccattttgtcgtcgcggctggc
attaccacgtctgcccccgccattgcccgctttctcgaaaccatagccttcatgccttca
gggatggtggtgctgccggatctcgacctgatcatgccggacgaggagtgggacttgctc
ggcccgttcctgccggacccggacagcggctacacgaagcgcgcgcaggaaacccatccg
caatatcatatcaaattgctgctcgaccgcatgtcgattgcgcgcggcgaggtgatgcgc
tggccgcgcaccggcgaaagcggcgcggcggccaaacgcagccgggcgttgagcaacgct
ttcgcgatcccacaactgaccgtgcgctggcagacactggaaagcgacgaacgcagcctc
gccggggtgcaaacggtcgaggcgcgcaacagcgccgaggaagcgcaggtcattgcgctg
ctggcgcgcgaggcgctggaagacccggaccagcgggtggcgattgtcacgccggaccgg
tcgctggcgacgcgcatttctgcccatctcaagcgctgggacatccaggtggatgatacc
gcggggcagcctctggcaaagcttccggaaggggtgttcttcctcaatctgctggcggcg
gtagcagacggttttccgccggccgaatttctcgcgcttctcaaacatccgcttgtgcag
cgcggggaggggcggctttcatggctcgaccaagtccgcaagctcgacctgcttttgcgt
ggcccgcgtccggcgccggggctggccggtatcgacgcgcttttgcggacagataattac
cggacgaagacattgcgcgcagccgtcacgccgtggtggcaatcggtgcgcacgatgttc
gaaccaatggaaaacctgttcgcgtctgcgctggactggccgaaacttctcgatgagctg
cggcaattggcggagacactgaccgatggcgcggtctgggccgggcccggcggacgggaa
ctggccgacttgctcgccaatttgcaggtgcgcgcggaaatgggtccgatccgcatcaag
gcggatgagctgcctggctatttcgagactttgatggccgatatttcggtgcgcccgcca
tacggaggccatccccggatcgcgctctacggattgctggaagcgcgcctgcaacagtct
gatctggtcatctgctgtggcctcaacgagggcagttggccgcaggcgatcacgcccgat
ccctggctggcaccaatgatccgcaaatcgctcggcctgccggcgcaggaacggcagatc
ggcctgtcagcgcatgatctggtcggcgcgatgggggcgaagcgggtgatcctctctcgc
gcgcatcgtgacgattccggccctgccattgcctcgcgcttcctgctccggctgaagggc
atgtgcggcgacaatctgaaggaacatccacaggcgcgtggctggttgtccgcgctcgac
cagccggagagcgaacccgcgccttatgcgcgtccggcaccagagccgagcaaggaacag
cggcatatcccgatttcggtgacccaggtcgatagcctgattgccgatccctattccttc
tacgcgaagaagatcatgggtctcgccgcgcttgacatgatcgacgccgacccgagcgcc
gcctggcgcgggacgatcatccatgacattctcgaccaatgggccaagcaggatgattat
gcaccggcggcattgcgggaacgggcgcagagatttctgcaggaccccggactgcacccg
ttgatgcgcagcctgtgggcgccgcgcctgctggaagggctggactggatcgccgatacg
ctggcggagggccgcaagagtggccgcgaaccgctggcttcggaaatatacggaaaggcc
gagatcgccggtgtcgaactgtcgggcatcgccgatcgcatcgaccggatgcccgatggc
ggcctcgccattgtcgattacaagaccggcggcgcgccgagcaacaaggcggtggccgaa
ggctataatctgcagctcggcctgcttgccgccattgctgaactgggcggcttcaaggat
atcgacggggaggcggtggcctttgaatattggtcgctggcgaaaaagggcggcaccgac
gatttcggtcatgtccgctcaccgacaaaagggcgcggcgacaatatcatcccggccgac
gcgatggtggatcatgccgtcgcccgttttaacgaggtcgccgatggctatatattgggc
gaggagccgatgaccgccaagctgcatccggaatatgcccgctatgccgattatgaccag
ttgatgcggctcgaggaatggtacgggcgtgcgccgacggaagggaccggggatgagtag
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integrated database retrieval system
