Sphingorhabdus sp. SMR4y: SPHFLASMR4Y_01071
Help
Entry
SPHFLASMR4Y_01071 CDS
T04949
Symbol
dnaE2
Name
(GenBank) DNA polymerase
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
sfla
Sphingorhabdus sp. SMR4y
Pathway
sfla03030
DNA replication
sfla03430
Mismatch repair
sfla03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sfla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SPHFLASMR4Y_01071 (dnaE2)
03430 Mismatch repair
SPHFLASMR4Y_01071 (dnaE2)
03440 Homologous recombination
SPHFLASMR4Y_01071 (dnaE2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sfla03032
]
SPHFLASMR4Y_01071 (dnaE2)
03400 DNA repair and recombination proteins [BR:
sfla03400
]
SPHFLASMR4Y_01071 (dnaE2)
Enzymes [BR:
sfla01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SPHFLASMR4Y_01071 (dnaE2)
DNA replication proteins [BR:
sfla03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SPHFLASMR4Y_01071 (dnaE2)
DNA repair and recombination proteins [BR:
sfla03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SPHFLASMR4Y_01071 (dnaE2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DUF655
tRNA_anti-codon
STAS
COE1_HLH
Motif
Other DBs
NCBI-ProteinID:
ASK87840
UniProt:
A0A220W4T1
LinkDB
All DBs
Position
complement(1118657..1122157)
Genome browser
AA seq
1166 aa
AA seq
DB search
MAQTPFVHLRTFSAYTILDGAMEPAAIGAAAKERGFPAVALCDRIGLFASMAFDDGCRGQ
GVQPITGCFLRVARPDADPTKPALDWIALYAQDAEGYENLCKLVSASHLDRPGELDAHVP
MEMLRDHNAGLLALTGGGEGALARLIAEEQQSEAEAYLSLLQQYFPGRLYIELSRREDPV
EMAAESGLIALAMDRDIPLVATNPSCFSEPDFHEAHDAMKCIAQSAYVENDEREKPSKHL
WMKSALVMEDLFSDIPEALQNTLVIAQRCAFSPPKRDPILPSLAGDLAGEIEQLRQDATA
GLERRLEFVGLTDEAERKVYFDRLAFELDVIVSMGFPGYFLIVADFIKWAKDHDIPVGPG
RGSGAGSVVAWALTITDLDPIKLGLLFERFLNPERVSMPDFDIDFCETRRGEVIRYVQEK
YGDRQVAQIITFGKLKARAVLRDVGRVLQMPYGQVDRLTKLVPNHPTDPWDLKRSLNGIT
ELAQEYKQSDVKRLFDLAMKLEGLPRHSSTHAAGVVIGDRPLDQLVPLYRDPRSDLPVTQ
FDMKFVEKAGLVKFDFLGLKTLSVLKKAVELLTERGITVELENLSWEDEKVFELLQRGDT
VGVFQLESEGMRRTLAAVKPTNFGDIIALVSLYRPGPMDNIPLFGDRKNGRVDIAYPHPL
LEDILKETYGIFVYQEQVMQAAQIIAGYSLGEADLLRRAMGKKIQAEMDVQRNRFVTGAA
EKGLNSEQANELFDLIDKFAGYGFNKSHAAAYALLAYQTAWLKAHHPHEFYAASMCFDMH
QSEKLSIFVDDMKRLGVTVLQPAINKSRPNFSVEEQPEALLAVRYALAGLKNVGEKAMHA
VVTERAKAGPFSSIEDFANRIDPHGLNKRQLESLASAGAFDDLEPNRAAVHDGADMILSV
ANSAADARESGQGGLFGEGSAGGDMQAIRLPEGSNWSLNEIMARERDAFGFYFSSHPVTQ
FQAVSSSLGAMTYAALCSGEPIGEGIRKPAVMSALIEKVRWRDSRRGKRFALADLSDSSG
QFSASCFDEDQCKILEELSQEGRCALLKVELDQQSEDENPRVAIRTVQPLDGLEKTTRTR
MELEILDIAGLHELTNLVAPLLGGQSEIVAIMAGPHDDFVKVCLGRSFRLDAETVEMLER
VQGLANVRLGPARPMRVAKPKLRLVS
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atggcccagactcctttcgtccatctccgcaccttttctgcctatacgatcctggacgga
gcgatggagccggccgcgattggtgctgccgccaaagagcgcggttttcctgctgttgcg
ctgtgtgaccggattggacttttcgcttccatggcgtttgatgacggttgccgcggccag
ggcgtgcagccgatcaccggctgctttctcagggttgcgcgtcccgatgccgatccgaca
aaaccggcgttggactggatcgcgctctacgcgcaggacgccgaaggctatgaaaatctc
tgcaagctggtttcggcctcccatctcgaccggcctggcgaacttgatgcccatgttccc
atggaaatgctgcgcgatcataatgccggtctgctggctctgaccgggggcggagaaggc
gctctggcgcgtctgattgcagaggagcagcaatcggaagccgaagcctatctgtccctg
ttgcagcaatattttccggggcggctgtatatcgaattgtcgcgtcgggaagatccggtc
gaaatggcggcggaatccggtctcattgcactggccatggatcgcgacattccgctggta
gcgacaaatccgagttgcttttcggagccggattttcacgaggcccatgatgcgatgaaa
tgtatcgcacagtctgcctatgtcgaaaatgacgaacgtgaaaagccttccaagcatctg
tggatgaaaagcgccttggtgatggaagacctgttctccgacataccagaagcgctgcaa
aatacattggttatcgcgcaacgatgcgcgttctcgccgccaaaacgagacccgatcctg
cccagtctggcgggtgatctggcgggagaaatcgagcaattgcgtcaggatgcgaccgcc
ggacttgaaagacggctggaatttgtcggtctgacggacgaagcggagcggaaggtctat
tttgaccgtcttgctttcgagcttgatgtgatcgtcagcatgggctttcccggctatttc
ctgattgttgccgactttatcaaatgggcgaaggatcatgatattccggtggggccggga
cgtggttccggtgcgggttcggttgtggcatgggcattgaccattaccgatctagacccg
atcaagctggggcttctgttcgaacggttcctgaacccggaacgtgtgtcgatgccggat
ttcgatatcgatttctgcgaaacccgacgcggcgaagtcattcgctatgtgcaggaaaaa
tacggcgaccggcaggtcgcccagatcatcaccttcggaaaactgaaagcgcgcgctgtg
ttgcgcgatgtcggccgggtccttcagatgccttacgggcaggtggaccgactgaccaaa
ttggtgcccaaccacccgaccgatccgtgggatctgaagcggtccctcaacggcatcacg
gaactggcgcaggaatataagcagtcggacgtcaagcggctgttcgatctggcgatgaag
ctggaggggctgccgcggcacagttccactcacgctgccggcgtggtgatcggggatcgt
ccgcttgaccagcttgtgccgctgtaccgtgatccccgttccgatctgccggtaacccag
ttcgacatgaaatttgtcgaaaaagccggtctggtgaaattcgactttctggggctgaaa
acgctgtcggtgctgaagaaggcggtcgaactgcttaccgaacgcggcataacggttgag
ctggaaaacctgagctgggaagacgagaaagttttcgagctgctccagcgcggcgatacc
gtcggtgtgttccagctggaatcggaaggcatgcggcgtacgctcgcggccgtgaaaccc
accaattttggtgatattatcgcgctggtttcgctctaccggccgggcccgatggacaat
attccgctgttcggggaccgcaagaacgggcgcgtcgatatcgcctatccgcatccattg
ctggaggatatcctcaaggagacttacgggatttttgtctatcaggaacaggtgatgcag
gccgcgcagatcatcgccggctattcgctcggcgaagcagatttgctgcgccgcgccatg
ggtaagaaaatccaggcggaaatggacgtgcagcgtaacagatttgtgacgggtgccgca
gaaaagggcttgaacagcgaacaggccaacgagcttttcgacttgatcgacaaatttgcc
ggctatggcttcaacaagagccacgcagcggcctacgccctgctggcctatcagacggcc
tggctgaaggcgcatcacccgcatgaattttatgccgcttcgatgtgtttcgacatgcat
cagtccgagaagctcagcatctttgtcgacgacatgaaacggttgggagtgaccgtgctg
cagccggcgatcaataagagccggcccaatttttcggtcgaggagcaaccggaagcgctg
cttgcggtacgctatgcgctggcaggtctgaagaatgtcggcgaaaaggcgatgcacgct
gtggttaccgaacgcgccaaggctggcccgttctcgtcgatcgaggattttgccaaccgg
attgatccgcacggcctcaacaagcgtcagctcgaaagtctggcttcggctggcgccttt
gatgatctggagcccaatcgcgcggcggtccatgacggcgcggacatgattctgtcggtc
gcaaacagtgccgctgatgcacgtgaaagcgggcagggggggcttttcggagaaggcagt
gccggtggcgacatgcaggcgatccggttgccggagggcagcaactggtcgctcaacgag
atcatggcccgcgagcgcgatgctttcggtttctatttttcctcgcaccccgtcacgcag
ttccaggcggtttcctcttcgcttggcgccatgacctatgcggcattgtgcagtggtgaa
ccgatcggcgaaggcatccgcaagccggcggtgatgtcggcgcttatcgagaaagtgcgc
tggcgggacagtcgccggggcaagagattcgcgcttgccgatctgtcggacagcagtggc
cagttttccgccagttgttttgacgaagaccagtgcaagattctggaagaactttcgcag
gaggggcgttgtgccctgctcaaggtcgaactggaccagcagtcggaagacgagaatccg
cgcgtcgcgatccggacggtgcagccgttggacggtctggagaagaccacccgcacccgc
atggagctggaaatcctcgatattgccggcctgcacgaactgaccaatctggtggcgccg
ttgctgggcggccaaagcgaaatagtggcaatcatggccggtccgcacgatgattttgtc
aaagtatgcctcgggcgctcctttcgtctggatgcggaaacggtggagatgctggagcgg
gttcagggtttggctaacgtccgcttgggaccggcccggccgatgcgggtggcgaaaccc
aaattaaggcttgtcagctag
DBGET
integrated database retrieval system
