Sphingorhabdus sp. SMR4y: SPHFLASMR4Y_01325
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Entry
SPHFLASMR4Y_01325 CDS
T04949
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
sfla
Sphingorhabdus sp. SMR4y
Brite
KEGG Orthology (KO) [BR:
sfla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sfla03016
]
SPHFLASMR4Y_01325 (rnd)
Enzymes [BR:
sfla01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
SPHFLASMR4Y_01325 (rnd)
Transfer RNA biogenesis [BR:
sfla03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
SPHFLASMR4Y_01325 (rnd)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
DUF167
Motif
Other DBs
NCBI-ProteinID:
ASK88090
UniProt:
A0A220W5J4
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All DBs
Position
1382424..1383605
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AA seq
393 aa
AA seq
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MHIHNLLTTNQDIADICARFATADFVAVDTEFMRENTYWPILCLIQISDGKEAAAIDPLA
KGVDLEPLMELLVNNENVLKIFHAGGQDVEIIHNITGKTPHPIFDTQIAAMAIGQSEQIG
YANLVDSWLGITLDKGARFTDWSRRPLNARQLEYAVADVTHLAKIFPMMLDKLRETGRGM
WINAEMEKLADPDNYVNDPEKSWLRVKSQGRNLEMLGRLKAIAAWREIEAQSKDLPRGRI
MRDETLADIAAHPPKNQSKLGQVRGLSAGWKNNDIGARLMDVIEQAEPLSRDDLPQKVGR
RPKNGKSNALVTDLLKLLLKIRSAEMNVASRLLARADDLERIVAGERENVPLLEGWRYEE
FGRDALDLVEGRVSFTVKDGKLKMTHQQDGDAE
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atgcacatccataatttgctgacaaccaatcaggacatcgccgatatctgcgcccgattt
gcgaccgcagacttcgtggcggttgatacagaattcatgcgcgagaatacctactggccc
attctctgcctgatccagatttccgatggcaaggaagccgcagctattgacccgttggcc
aagggcgtcgatctcgaaccgcttatggaattgctggtcaacaacgagaatgtcctcaag
attttccatgccggaggacaggatgtcgaaatcatccataatatcaccggcaaaacccct
cacccgatcttcgatacccagattgcagccatggcgatcggacagagcgagcagatcggc
tatgccaatctcgtggacagctggctgggcatcactttggacaaaggcgcgcgctttacc
gactggtcgcggcgtccgctcaacgcccggcaactggaatatgccgtggccgatgttacc
catctagcaaaaattttcccgatgatgctcgacaaattgcgcgagacgggtcgaggcatg
tggatcaacgcggagatggaaaagctcgccgatcccgacaattatgtcaacgatccggaa
aaatcctggctgcgggtcaagtcgcagggccgcaatcttgagatgctgggaagactgaaa
gccattgctgcctggcgggagatcgaagcccagtccaaggatctgccccgtggccggatc
atgcgcgatgaaacactggcggacattgcggcgcatcccccgaaaaatcagtccaagctc
ggacaggtccgcggcctttcggccggttggaagaataacgacatcggcgcacggctgatg
gacgtcatcgaacaggcagaaccgctgtcgcgtgacgacctgccgcagaaagtgggccgg
cgccccaaaaatggcaagtccaacgcactggtcacagacttgctcaaactgttgctcaaa
atccgctcggctgaaatgaatgttgcatcccgcctgctcgctcgcgccgatgatctcgaa
cgcatcgtcgccggagagcgcgagaacgtgccattgctcgaaggttggcgctacgaggag
ttcggccgggacgcgctggatctggtcgaaggccgtgtcagttttacggtcaaggacgga
aaattgaagatgacacaccagcaagatggtgacgcagaatag
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