Sphingorhabdus sp. SMR4y: SPHFLASMR4Y_01894
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Entry
SPHFLASMR4Y_01894 CDS
T04949
Symbol
xseB
Name
(GenBank) exodeoxyribonuclease 7 small subunit
KO
K03602
exodeoxyribonuclease VII small subunit [EC:
3.1.11.6
]
Organism
sfla
Sphingorhabdus sp. SMR4y
Pathway
sfla03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sfla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
SPHFLASMR4Y_01894 (xseB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfla03400
]
SPHFLASMR4Y_01894 (xseB)
Enzymes [BR:
sfla01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.6 exodeoxyribonuclease VII
SPHFLASMR4Y_01894 (xseB)
DNA repair and recombination proteins [BR:
sfla03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
SPHFLASMR4Y_01894 (xseB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_VII_S
Bombinin
Motif
Other DBs
NCBI-ProteinID:
ASK88640
UniProt:
A0A220W742
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All DBs
Position
complement(1944244..1944492)
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AA seq
82 aa
AA seq
DB search
MSETNEDLSALNFEDALKRLEDIVRKLESGDVPLDQSIALYSEGEKLRGLCQQRLEAAQA
KIEKITLDRDGKPQATAPFDAD
NT seq
249 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaaaccaacgaagatctttccgccctgaatttcgaggatgcgctgaagcggctc
gaagatattgtccgcaaactggaaagcggcgatgtgccgctcgaccagtcgattgcgctc
tatagcgaaggcgagaaactgcgcggactgtgccagcaacggctggaagcggcgcaggcc
aagatcgagaaaatcaccctcgaccgcgatggcaaaccgcaagctactgccccttttgac
gcggactga
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