KEGG   Sphingorhabdus sp. SMR4y: SPHFLASMR4Y_02101
Entry
SPHFLASMR4Y_02101 CDS       T04949                                 
Symbol
pdhD
Name
(GenBank) dihydrolipoyl dehydrogenase
  KO
K00382  dihydrolipoyl dehydrogenase [EC:1.8.1.4]
Organism
sfla  Sphingorhabdus sp. SMR4y
Pathway
sfla00010  Glycolysis / Gluconeogenesis
sfla00020  Citrate cycle (TCA cycle)
sfla00260  Glycine, serine and threonine metabolism
sfla00280  Valine, leucine and isoleucine degradation
sfla00310  Lysine degradation
sfla00380  Tryptophan metabolism
sfla00620  Pyruvate metabolism
sfla00630  Glyoxylate and dicarboxylate metabolism
sfla00640  Propanoate metabolism
sfla00670  One carbon pool by folate
sfla00785  Lipoic acid metabolism
sfla01100  Metabolic pathways
sfla01110  Biosynthesis of secondary metabolites
sfla01120  Microbial metabolism in diverse environments
sfla01200  Carbon metabolism
sfla01210  2-Oxocarboxylic acid metabolism
sfla01240  Biosynthesis of cofactors
Module
sfla_M00009  Citrate cycle (TCA cycle, Krebs cycle)
sfla_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
sfla_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA
sfla_M00621  Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:sfla00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00010 Glycolysis / Gluconeogenesis
    SPHFLASMR4Y_02101 (pdhD)
   00020 Citrate cycle (TCA cycle)
    SPHFLASMR4Y_02101 (pdhD)
   00620 Pyruvate metabolism
    SPHFLASMR4Y_02101 (pdhD)
   00630 Glyoxylate and dicarboxylate metabolism
    SPHFLASMR4Y_02101 (pdhD)
   00640 Propanoate metabolism
    SPHFLASMR4Y_02101 (pdhD)
  09105 Amino acid metabolism
   00260 Glycine, serine and threonine metabolism
    SPHFLASMR4Y_02101 (pdhD)
   00280 Valine, leucine and isoleucine degradation
    SPHFLASMR4Y_02101 (pdhD)
   00310 Lysine degradation
    SPHFLASMR4Y_02101 (pdhD)
   00380 Tryptophan metabolism
    SPHFLASMR4Y_02101 (pdhD)
  09108 Metabolism of cofactors and vitamins
   00785 Lipoic acid metabolism
    SPHFLASMR4Y_02101 (pdhD)
   00670 One carbon pool by folate
    SPHFLASMR4Y_02101 (pdhD)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:sfla04147]
    SPHFLASMR4Y_02101 (pdhD)
Enzymes [BR:sfla01000]
 1. Oxidoreductases
  1.8  Acting on a sulfur group of donors
   1.8.1  With NAD+ or NADP+ as acceptor
    1.8.1.4  dihydrolipoyl dehydrogenase
     SPHFLASMR4Y_02101 (pdhD)
Exosome [BR:sfla04147]
 Exosomal proteins
  Exosomal proteins of breast cancer cells
   SPHFLASMR4Y_02101 (pdhD)
SSDB
Motif
Pfam: Pyr_redox_2 Pyr_redox_dim Pyr_redox GIDA Pyr_redox_3 NAD_binding_8 HI0933_like Lys_Orn_oxgnase AlaDh_PNT_C DAO FAD_binding_2 Lycopene_cycl
Other DBs
NCBI-ProteinID: ASK88845
UniProt: A0A220W7N7
LinkDB
Position
2149174..2150655
AA seq 493 aa
MTNQTVITNSYRPISGAGEFDFDVAIIGAGTAGMAAYREASQYSDRVALIDGGPLGTTCA
RVGCMPSKLLIAAAEAAHAGSRTPMFGVRYDDPAIDGIAVMKRVRGERDRFVGFVTEAVH
GFDKGEIIREYARFEDDHTLRLSSGRKISARTIVIATGSRPAIPQALFAAGERLIVNDDI
FDWTDLPGSVAVFGAGVIGLELGQALHRLGVRVRLFGRGGQAGPLTDPVVRQYATDIFSG
EFPAIWNADTRISRKRDTVAVRWGEAADQEAGFDYLVAATGRRPNIDKIGLENTGLPLGT
TGVPQYDPLSGRVGDTHIFIAGDAALDLPLLHEAADEGRLAGENAARFPHSYRRSRRTPI
GIVFSDPQIAMVGASHASLLARPGCHFATGEVSFEDQGRARVMGLNKGILRLYAEHGSAR
FLGAEMIGPSAEHIAHLLAWSIQANMTVEQILQMPFYHPVLEEGVRTAFRNLNHALGFGP
NPPLQCIDCGPGA
NT seq 1482 nt   +upstreamnt  +downstreamnt
atgaccaatcaaacggtaatcaccaacagctacaggccgatatctggcgccggtgaattc
gatttcgatgtcgccatcatcggcgctggcacagccggaatggcggcctatcgtgaagct
tcgcaatatagcgatcgcgttgcactgatcgatggcgggccactaggcacaacatgcgcg
cgcgtgggctgcatgccttccaaactcctgatcgcagcagccgaggcagcgcatgcgggg
tccaggactcccatgttcggggtccgatatgacgatccggcgatcgacggcatagccgtg
atgaaacgggtacgtggcgagcgtgaccgctttgtcggttttgtcacagaggctgtccat
ggattcgacaagggcgagataataagggaatatgcccgcttcgaagacgatcacacgctt
cggttgagcagcggacgcaagatttctgcccgcacgatagtcatcgccaccggttcgcgg
cccgccattccccaagcattattcgccgccggcgaaaggctgatcgtcaatgatgatata
tttgactggaccgatctgcccggttcggtcgcggtattcggggctggtgtcatcgggctg
gaattggggcaggccctgcaccggctgggagtgcgcgtgcgtcttttcggaaggggcggt
caggccgggccactaaccgatccagtggtgcgccaatatgcgaccgacattttttctggc
gagtttccggccatctggaacgctgacacccggatttcgcgcaaaagggatactgtcgcg
gtgcgctggggcgaagcggcggatcaggaagccggcttcgactatctggtcgcagccacc
ggtcgcaggcccaatattgataaaatcggtctcgagaataccggcctgccgctcggaacg
acgggcgtgcctcaatatgaccccttgtccggccgcgttggcgacacccatatattcatt
gccggcgatgctgcgcttgacctgccgctgctgcacgaagcggcagatgagggccgcttg
gccggagagaatgcagcgcgctttccgcattcatacagacgatctcgccgcaccccgatc
ggcatcgttttctccgatccgcaaattgctatggtcggggccagccatgcctcgctcttg
gctagaccgggatgccacttcgcgaccggagaagtttcatttgaggaccagggccgtgcc
cgggtgatgggtctcaacaagggcatcctcaggctttatgccgaacacggcagcgcacgg
tttctcggagccgaaatgatcggcccttcagctgaacatatcgcgcatcttctggcctgg
tccattcaggccaacatgaccgtggagcaaatcctgcaaatgccgttttaccatcccgta
ctggaagagggcgtgcgcacagccttcagaaatctgaaccatgctcttggatttggcccc
aatcctccactgcaatgtattgattgcggaccgggagcctga

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