KEGG   Sphingorhabdus sp. SMR4y: SPHFLASMR4Y_02261
Entry
SPHFLASMR4Y_02261 CDS       T04949                                 
Symbol
cshB
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshB
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
sfla  Sphingorhabdus sp. SMR4y
Brite
KEGG Orthology (KO) [BR:sfla00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sfla03400]
    SPHFLASMR4Y_02261 (cshB)
Enzymes [BR:sfla01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     SPHFLASMR4Y_02261 (cshB)
    5.6.2.6  RNA 3'-5' helicase
     SPHFLASMR4Y_02261 (cshB)
DNA repair and recombination proteins [BR:sfla03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    SPHFLASMR4Y_02261 (cshB)
SSDB
Motif
Pfam: DEAD_assoc WHD_Lhr DEAD Helicase_C ResIII Cas3-like_C_2
Other DBs
NCBI-ProteinID: ASK89004
LinkDB
Position
2300683..2303193
AA seq 836 aa
MADDNIPSILSDWFAARGWQVRPHQLAMLETARVGRHALLTAPTGAGKTLAGFLPTLVEL
VEQADRKPVRAEPVEAPGQTQSTLRQAQGERKDLHTLYISPLKALAVDVQRNLLTPIAEM
GLPITVETRSGDTPAARKARQRVKPPQILLTTPESLNLLLSQPESFALFANLRRVVIDEV
HAFASGKRGDLLALSLARLQKIAPEMQRVALSATVAEPDDFRAWLAPYGDIDSVTHVRGA
DGAPADLSIMLPETPEGDPVRVPWSGHAGSYAIPQVMEQIRRNRMTLIFCNTRFLAEFTF
QQLWDINDETLPIGVHHGSLSKEARRKVENAMASGKMRALVCTASLDLGVDWGDIDCVIQ
MGAPKGSSRLLQRIGRANHRLDVSSKALLVPGNRFEYLEAQAALDAVNEGRRDGEPFRAG
GLDVLAQHVMSCACAGPFQEDDLLDEVQSALPYSALSREQFERVLNFTRDGGYALKAYDR
FKRLRRDARGVWSLTHPKFAAQHRLNAGIIVDAAMMNVRFKNGRNLGKVEEGFAAMLSVG
DTFFFAGLSLELIKMDASDVIVRAAKKAAMIPSYGGARLPLTTHLSDRVRAFLTDRAGWS
RFPDDVREWLEMQDHRSVMPEPGQLLVETFPHKKLHYMVAYSFEGWNAHQSLGMLLTRRM
EDRGLKPIGFVANDYALACYSIEPVTDPRPLFSADILEEEFFDWVEGSHLLKRAFREVAV
ISGLVERQHPGKRKTGKQVTFSTDLIFDVLRKYEPDHLLMQAAWADARARMTDVGRLGDL
LDRAADSLIHVELERVSPLAVPVLVMIGREHVAQGATDDALLIEAESLINEAMTID
NT seq 2511 nt   +upstreamnt  +downstreamnt
atggccgatgacaatattccgtctatcctgagcgactggttcgccgcgcgcggctggcag
gtgcggccgcaccagctggcgatgctggagacagcccgggtcgggcgtcacgccctgctg
accgcaccgaccggggcgggcaagacgctggcgggctttttgccgacactggtagagctt
gtggaacaggcggacaggaaacccgttcgtgctgagcctgtcgaagcacccggccagacg
caatcgacccttcgacaggctcagggcgaacggaaagacctccacacgctctatatctcg
ccgctcaaggcgctcgcggtcgatgtgcagcgcaacctgctgacgccgatcgcggaaatg
ggcctgccgatcacggtcgagacgcgcagcggcgatacgccggcggcgcgcaaggcacgg
cagcgggtcaagccaccgcagattttgctgaccacgccggaatcgctcaacctgctgctc
agccagccggaaagctttgccctgtttgcgaatctcaggcgtgtggtgatcgacgaagtg
cacgcctttgccagcggcaagcgcggcgacctgctggccctgtcgctggcgcggctgcag
aaaattgccccggaaatgcagcgtgttgccctgtcggcgacggtggccgagccggatgat
ttccgcgcctggctggcgccatatggcgatatcgacagcgtcacccatgtgcggggcgcg
gacggcgcgccggccgatctgtcgatcatgctgcccgagacgccggagggcgatccggtg
cgcgtgccctggtccggccatgccggaagctatgcgatcccgcaggtgatggagcagatt
cgcaggaaccggatgaccctgatcttctgcaacacccggtttctcgccgagttcaccttc
cagcagctgtgggacatcaatgacgagacgctgcccatcggcgtccatcacggcagcctg
tcgaaggaagcccggcgcaaggtcgagaacgccatggcgtcaggcaagatgcgggcgctg
gtttgcaccgcctcgctcgatctcggggtcgactggggcgatatcgactgcgtcatccag
atgggcgcgcccaagggctcgtcgcggctgctgcagcggatcggtcgcgccaaccaccga
ctggacgtatcgtcgaaagcgctgctcgtgcccggcaaccgctttgaatatctcgaggcg
caggcggcgctggatgcggtcaatgaaggccgccgtgatggcgagccgttccgcgccggc
ggcctcgacgtgctcgcccagcatgtgatgagttgcgcctgcgccgggccgttccaggag
gacgatctgctcgacgaggtgcaaagcgccctgccctatagcgccctgtcgagggaacag
ttcgagcgggtgctgaatttcacccgcgacggcggctatgcgctgaaagcctatgaccgg
ttcaagcggctgcgccgggatgccaggggcgtgtggagcctgacccatccgaaattcgcc
gcccagcaccggctgaacgcggggatcatcgtcgacgcggcgatgatgaatgtgcggttc
aagaacggccgcaatctcggcaaggtcgaggaaggctttgccgccatgctgtcggtcggc
gacacgtttttcttcgccggcctgagtctcgagctgatcaagatggatgccagcgacgtg
attgtccgcgcggccaagaaagcggcgatgatcccgagctatggcggcgcgcggctgccg
ctgaccacccatttgtcggaccgggtgcgcgctttcctgaccgaccgggccggctggtcg
cgttttcccgacgatgtccgcgaatggctggaaatgcaggaccatcgctcggtcatgccc
gaaccggggcaattgctggtcgagacctttccgcacaagaagctgcattatatggtcgcc
tacagtttcgaaggctggaacgcgcaccagtcgctcggcatgctgctaacccggcggatg
gaggatcgcggactcaagccgatcggctttgtcgccaatgattatgcgctggcctgctac
agcatcgagccggtcaccgatccccgcccgctgttcagcgccgacatcctggaggaggaa
tttttcgactgggtcgaggggtcgcatctgctcaagcgcgccttccgcgaggtggcggtg
atcagcgggctggtcgagcgtcagcatcccggcaagcgcaagaccggcaagcaggtcacc
ttctcgaccgacctgattttcgacgtgttgcgcaaatatgagccggatcatctgctgatg
caggcggcctgggcggatgcaagagcacggatgaccgatgtcggacggctgggcgacctg
ctcgaccgggcggcggactcgctaatccatgtcgaactggagcgggtcagcccgctggca
gtgccggtgctggtgatgatcgggcgcgaacatgtggcgcagggcgcgaccgatgacgcg
ctgctgatcgaggcggaatcgctgatcaacgaggcgatgacaatcgactga

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