Sphingorhabdus sp. SMR4y: SPHFLASMR4Y_03001
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Entry
SPHFLASMR4Y_03001 CDS
T04949
Symbol
nodD2
Name
(GenBank) nodulation protein D 2
KO
K14657
LysR family transcriptional regulator, nod-box dependent transcriptional activator
Organism
sfla
Sphingorhabdus sp. SMR4y
Brite
KEGG Orthology (KO) [BR:
sfla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sfla03000
]
SPHFLASMR4Y_03001 (nodD2)
Transcription factors [BR:
sfla03000
]
Prokaryotic type
Helix-turn-helix
LysR family
SPHFLASMR4Y_03001 (nodD2)
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Gene cluster
GFIT
Motif
Pfam:
LysR_substrate
HTH_1
AMNp_N
Motif
Other DBs
NCBI-ProteinID:
ASK89734
UniProt:
A0A220WAB0
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All DBs
Position
3064408..3065307
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AA seq
299 aa
AA seq
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MRLDNFDLNLLVAFDILLQEKNVTKAAARAHVTQAAMSAQLKRLREAFQDEILAQQGKKM
VPTPYALAMHPEITETIAALRSLIARKGRFDPTTSEREFKIAASDYITTVLLVPLLGAIA
KIAPFVKLNISLPYTNTNKSMADGELDMFLGPESFAHPDHPCELIFEERHVLVGWSGNPH
MEGTMSAKRLAALGHVGVTISGSDTFIDAWMRETGIERRIEVRAPSFLQAPFLVLETNRV
CIMHERLAQSLAGRLPLSIAELPFDVPPMREMLQFHATRDKDPGLTWLREQIKTLASLS
NT seq
900 nt
NT seq
+upstream
nt +downstream
nt
atgcggctggacaatttcgatctcaatttgctcgtggctttcgacatcctgctacaggaa
aaaaatgtcaccaaggcagcagccagagcgcatgtgacgcaagcagcaatgagcgcacaa
ctgaagcgccttcgggaagcttttcaggacgagatactggcgcaacagggcaagaaaatg
gtgccgactccctatgcgctggcgatgcatcccgagattaccgaaaccatcgcggcgctg
cgctcccttatcgcacgcaaaggcagatttgatccgacaacgtccgagcgcgagttcaag
atcgctgcctcggattatataacgaccgtgttgctggtccccctgctgggtgcaatcgca
aaaattgctcccttcgtgaaactgaatatttccctgccctataccaataccaacaaatcg
atggccgacggcgagctcgacatgttcctcggtcccgaatccttcgcgcaccccgaccat
ccgtgtgaactgatattcgaagagcggcacgtccttgtgggctggtcgggaaatcctcac
atggaaggaacaatgtccgccaagcgcctggccgcgctcggccacgtgggagtcacaatc
tcaggcagcgacacgttcattgatgcatggatgcgcgagaccggtatcgagcgccggata
gaggtgcgcgcgccctcctttctgcaggccccctttctggtgctggaaaccaatcgtgtc
tgcatcatgcacgagcgactggcccagtcgctggccgggcgcctccctctgagcatcgcg
gaactgccctttgatgtcccgcccatgcgcgagatgctgcagtttcatgcaacacgggac
aaggatcccggcctcacctggctgcgggagcagatcaagactctggcgtcgctcagctag
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