Sphingorhabdus sp. SMR4y: SPHFLASMR4Y_03025
Help
Entry
SPHFLASMR4Y_03025 CDS
T04949
Symbol
rimO
Name
(GenBank) ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
sfla
Sphingorhabdus sp. SMR4y
Brite
KEGG Orthology (KO) [BR:
sfla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sfla03009
]
SPHFLASMR4Y_03025 (rimO)
Enzymes [BR:
sfla01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
SPHFLASMR4Y_03025 (rimO)
Ribosome biogenesis [BR:
sfla03009
]
Prokaryotic type
ribosomal protein modification factors
SPHFLASMR4Y_03025 (rimO)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
UPF0004
TRAM_2
Motif
Other DBs
NCBI-ProteinID:
ASK89758
UniProt:
A0A220WAC3
LinkDB
All DBs
Position
3088525..3089907
Genome browser
AA seq
460 aa
AA seq
DB search
MATQIPSPPKVGMVSLGCPKALVDSERILTQLRSDGYDMSADYAGADVVLVNTCGFLDSA
KEESLEAIGEAMAENGRVIVTGCMGNEADLIMERFPDVLAVTGAHQYEDVVTAVHAAAPA
ARGAFVDLVPDAGLKLTPRHYSYLKISEGCNHRCSFCIIPSLRGDLVSRRPDAILREAEK
LVAAGTKELLVISQDTSAYGVDIRHEPRVWNGPTGQGREVRAHMTDLAAALGELRTPEGQ
GVWTRLHYVYPYPHVDKVIPLMAERKITPYLDIPFQHAAPNVLKRMKRPANEAKVLQRVK
SWRDICPDLTIRSTFVVGFPGETEEDFQYLLDWLEEAQLDRVGAFRFEPVEGAAANLLDG
AVPEEVKEERYQRIMDVTARISAAKLQAKVGRTLPVIIDEIGEADEDGDIGATARSEADA
PEIDGNVFLRNVSAGLAVGDIIDAVIEDADEHDLFGVAAG
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atggctacccaaatcccttctccgcccaaagtgggcatggtttcgctcggctgccccaag
gcgctggtcgacagcgaacgcatcctgacgcagctcagaagcgacggctatgacatgtcg
gccgactatgccggcgccgatgtcgtgctggtcaacacctgcggctttctcgacagcgcc
aaggaagagagcctcgaggcgatcggcgaggcgatggccgagaacggccgggtgatcgtc
accggctgcatgggcaatgaggccgacctgatcatggaacgcttccccgatgtgctcgcc
gtcaccggcgcgcatcagtacgaggacgttgtcaccgcggtccacgctgcggccccggca
gcccgcggcgcgttcgtcgatctcgtccccgacgccggtctcaagctgacgccccgccat
tacagctatctcaagatttccgaaggctgcaaccaccgctgttccttctgcatcatcccc
agcctgcgcggcgatctggtcagccgccgcccggacgcgatcctgcgcgaggcggagaag
ctggtcgcggccggcacgaaagagctgctcgtcatcagccaggacacttctgcctacggc
gtcgatatccgccatgaaccgcgcgtctggaacggcccgaccggacagggccgcgaagtc
cgcgcccatatgaccgatctcgctgctgctcttggcgaactgcggacaccggaagggcag
ggcgtgtggacccggctccactatgtctatccctatccgcatgtcgacaaggtcatcccg
ctgatggccgagcgcaagatcacgccctatctcgacatcccgttccagcacgccgcgccc
aatgttctcaaacgcatgaagcgcccggccaacgaggccaaggtgctgcagcgggtcaag
agctggcgcgacatctgccccgatctcacgatccgctcgaccttcgtcgtcggcttcccc
ggcgagacggaagaggacttccaatatctgctcgactggctcgaggaagcgcagctcgac
cgggtcggcgctttccgttttgagcctgtagagggcgcggcggccaatctgctcgacggc
gccgtgcccgaagaggtcaaggaagagcgataccagcggatcatggacgtcaccgcccgg
atcagcgccgccaagctgcaggccaaggtcggccgtacgctccccgtgatcatcgacgag
atcggcgaagccgacgaggatggcgacatcggtgccaccgcgcggagtgaggccgatgcg
ccggagatcgatggcaatgtgttcctgcgcaatgtgagcgcgggccttgcggtcggcgat
atcatcgacgcggtgatcgaagatgccgacgagcatgacctgttcggggttgctgcgggt
tag
DBGET
integrated database retrieval system
