Sphingorhabdus sp. SMR4y: SPHFLASMR4Y_03182
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Entry
SPHFLASMR4Y_03182 CDS
T04949
Name
(GenBank) eukaryotic DNA topoisomerase I, catalytic core
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
sfla
Sphingorhabdus sp. SMR4y
Brite
KEGG Orthology (KO) [BR:
sfla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sfla03032
]
SPHFLASMR4Y_03182
03400 DNA repair and recombination proteins [BR:
sfla03400
]
SPHFLASMR4Y_03182
Enzymes [BR:
sfla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
SPHFLASMR4Y_03182
DNA replication proteins [BR:
sfla03032
]
Prokaryotic type
DNA Topoisomerases
SPHFLASMR4Y_03182
DNA repair and recombination proteins [BR:
sfla03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
SPHFLASMR4Y_03182
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Top1B_N_bact
Topoisom_I
Motif
Other DBs
NCBI-ProteinID:
ASK89911
UniProt:
A0A220WAT1
LinkDB
All DBs
Position
3253048..3254055
Genome browser
AA seq
335 aa
AA seq
DB search
MIHEPSLRIPSLVYSSDEQPGISRVRRGRGFQYFLPDRSHLKCRIELARIKALGVPPAYK
NVWICPQANGHIQATGYDDAARKQYRYHDDWREFRDRQKFDQLAQFATVLPRIRRKVNAL
LQPDGAADEGPGKAVALAALVRLIDRTAIRVGGSSRMSKGATTLDGGNVRYEEDRLRLRY
RAKGGKKVSCSLRDSRLQKILEQIDDLPGKRLFQYVGVDGAVHPLDSGDVNDWLKTVSGM
DSLSAKMFRTWHGSVAALEAVTAEDKPTIKQASEAAAAALRNTPAICRKSYVHPAVFELI
GLAADERLAMIEGRAAQISGLRVGENRFAGLIGGA
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atgatccacgaaccctcgctccgcattcccagtctggtctatagcagcgacgagcagccg
ggcatctcgcgggttcggcgggggcgggggttccagtatttcttgcccgaccggagccac
ttgaaatgccgcatcgaactggcgcggatcaaggcgctgggagtgccgccggcctacaag
aatgtctggatctgtccgcaggccaatggccatatccaggcgaccggctatgatgatgcg
gcgcgcaagcaatatcgctatcatgacgactggcgggagtttcgtgaccggcagaagttc
gatcaactggcccaatttgccacggtgctgccgcggatccggcgcaaggtgaacgcgctg
ctccagcccgatggcgcggccgatgaagggccgggcaaggcggtggcgcttgccgcgctg
gtgcggctgatcgaccggaccgcgatccgggtcggcggcagctcgcggatgagcaagggg
gcaaccacgctcgatggcggcaatgtccgttatgaggaggaccggctgcggctgcgctat
cgtgccaagggcgggaagaaggtgagctgcagcctgcgcgacagtcggctgcaaaagata
ttggagcagatcgacgacctgcccggcaagcgcctgttccaatatgtcggcgtggacggg
gcggtgcatccgctcgacagcggcgacgtcaatgactggctgaagacagtgtccggaatg
gacagtctgagcgccaagatgttccgcacctggcacggcagcgttgccgcgctcgaggcg
gtcacggcggaggacaagccgacgatcaaacaggccagcgaagccgccgccgcagccctg
cgcaacacgccggcgatctgccgcaagagctatgtccatccggcggtgttcgagctgatc
ggcctggcggcggacgagcgcctggcgatgatcgagggcagggcggcgcagatcagcggc
ctgcgggtgggcgagaaccgattcgccgggttgattggcggggcatga
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