Streptomyces flavusporus: ACKTSN_42185
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Entry
ACKTSN_42185 CDS
T11144
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sflu Streptomyces flavusporus
Brite
KEGG Orthology (KO) [BR:
sflu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sflu03016
]
ACKTSN_42185
Enzymes [BR:
sflu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
ACKTSN_42185
Transfer RNA biogenesis [BR:
sflu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
ACKTSN_42185
Prokaryotic type
tRNA splicing ligases
ACKTSN_42185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
XLX11789
LinkDB
All DBs
Position
8966695..8968107
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AA seq
470 aa
AA seq
DB search
MELVEERPYRFRIDPHDGMRVPGVVFASRDLLSDAEQSLEQVANVATLPGIVSASYAMPD
IHWGYGFPIGGVAATAVDAGGVVSPGGVGFDISCGVRLLAADCDRQGLRGMLPAIMDGLG
RRIPRGAGPGGVWRLSGQEELERILRGGSRYAVEQGHGEERDLTRCEDGGAVADADVTQV
SERARERGLVQVGSLGSANHFLEVQEVAEVYDEPVATAFGLARGQVCVMIHCGSRGLGHQ
ICTDHVRLMDRAMNRYGITVPDRQLACTPVDSPEGRAYLGAMAAAANYGRANRQLLSDAA
RGVFRRVAGVRLSLVYDVSHNLAKMETHTVDGTPRLLCVHRKGATRAFPPGHPELPEDLR
DFGQPVLIPGTMGTASYVLAGVPVGDAFHSACHGAGRTLSRHRAARTVTGRELRARLERA
GIAVRPKSWRGLAEETPEAYKDVSAVVAATEAAGLSRTVARLVPLGVVKG
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atggaactggtcgaggaacgcccctaccgcttccgcatcgacccgcatgacgggatgcgg
gtgcccggcgtggtgttcgcctcccgtgacctgctgagcgatgccgagcagtcgctggag
caggtggccaacgtggccaccctgccgggcatcgtcagtgcctcgtacgccatgccggac
atccactggggctatggcttccccatcggtggcgtcgcggcgaccgccgtggacgcgggc
ggcgtggtctcgcccggcggggtcggcttcgacatctcctgcggggtacggctgctggcg
gccgactgcgaccggcaggggctgcgggggatgctgcccgcgatcatggatggcctgggc
cggcggattccgcggggtgcgggcccgggaggggtgtggcggctgagcgggcaggaggag
ctggagcggatcctgcggggcggttcccggtacgccgtcgaacagggtcacggcgaggag
cgcgacctgacccgctgcgaggacggcggggcggtcgcggacgccgatgtgacgcaggtg
agcgagcgggccagggagcggggcctggtgcaggtcggcagccttggctccgccaaccac
ttcctggaggtccaggaggtcgccgaggtgtacgacgaaccggtcgccaccgccttcggg
ctcgcccgcggtcaggtgtgcgtgatgatccactgcggttcgcgcggcctcgggcaccag
atctgtaccgaccacgtccggttgatggaccgcgcgatgaaccggtacggcatcaccgtc
cccgaccgccaactggcctgcacaccggtcgactcgcccgagggacgggcgtatctgggc
gcgatggccgcggccgccaactacggccgggcgaaccgccagttgctgtccgatgcggca
cgcggggtcttccgccgcgtcgcaggtgtgcggctgtccctggtgtacgacgtgtcccac
aacctcgccaagatggaaacgcacacggtggacgggacaccgcgcctgctgtgcgtgcac
cgcaagggcgccacccgcgccttcccgcccggccaccccgaactgcccgaggacctgcgg
gacttcgggcagccggtgctgatccccggcaccatgggcacggcctcctacgtcctcgcg
ggtgtgccggtcggcgacgcgttccactccgcctgccacggcgcgggccggaccctgagc
cgccaccgggccgcccgcacggtcacgggccgggaactgcgcgcccgactggaacgggcc
ggtatcgccgtacgcccgaagtcgtggcggggtctggccgaagagactcccgaggcctac
aaggacgtgagcgcggtggtggcggcgaccgaggccgcgggactgtcccgcacggtggcc
aggctggttccgctgggtgtggtgaagggatga
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