Sphingosinicella flava: IC614_00540
Help
Entry
IC614_00540 CDS
T09809
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sflv
Sphingosinicella flava
Pathway
sflv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sflv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IC614_00540 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sflv03021
]
IC614_00540 (rpoC)
03400 DNA repair and recombination proteins [BR:
sflv03400
]
IC614_00540 (rpoC)
Enzymes [BR:
sflv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IC614_00540 (rpoC)
Transcription machinery [BR:
sflv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IC614_00540 (rpoC)
DNA repair and recombination proteins [BR:
sflv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IC614_00540 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
QPQ55148
UniProt:
A0A7T2LM96
LinkDB
All DBs
Position
complement(95794..100062)
Genome browser
AA seq
1422 aa
AA seq
DB search
MNELTNFANPVAKPETFDQIKIGIASPERIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKYKGIVCEKCGVEVTVSKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMQLKQLERVLYFESYVVIEPGLTPLEKYQLLTEDELIEAQDEYGEDAFSAG
IGAEAVKQMLMDLDLEGERKDLLEELATTKSELKPKKIIKRLKVVESFLESGNRPEWMIL
DVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIVRNEKRML
QEAVDALFDNGRRGRTITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP
ELKLHQCGLPKKMALELFKPFIYSRLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREH
PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGLYYLSLEREGEPGEGSLLSDMQEVHQALNA
GAVTLHSKIVSRVPQTDENGNTYMKRFETTPGRMLLGETLPKSHKVPFETVNRLLTKKDI
GDVIDEVYRHTGQKETVLFADAIMQLGFRHAFRAGISFGKDDMIIPHEKEGLVDETRALV
KDYEQQYQDGLITQQEKYNKVIDAWSRCGDQVANAMMDKIKAQPKDENGRMAPINSIYMM
AHSGARGSQAQMKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLAD
TALKTANSGYLTRRLVDVSQDCVIVEEDCKTSNALEMRAIVQGGATIASLGERILGRTPS
EDIVDSKTGDVIAREGTLIDEPAALKIDELGIQAVKIRSPLICESVQGVCGKCYGRDLAR
GTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLNETSNLEAAVDGTIELRDLPTI
MDSRGRRIAMARNGELAIVDMDGRERASHRIPYGAHLLVDHGHIVSKGDRIAEWDPFMMP
VITEKGGTVKFQDLIEGKTLTEQTDEATGIAQRVVTEFRGTSRSKEDLRPRITLLDDNSG
EAARYMLSPGAMLSVEDGQVVQAGEVLARVSREAAKTRDITGGLPRVAELFEARKPKENA
IIAKVSGRVSFGKDYKAKRKIAIIPEDGGDPVEYLVPKSKVIDVQEGDFIKRGDNLIGGS
PDPHDILEVLGVVALAEYLVSEIQEVYRLQGVKINDKHIEVIVRQMLQKVEIIESGDTTL
LVGEQVDLAEMNEINAKLGKNQARAVGKPVLLGITKASLQTRSFISAASFQETTRVLTEA
SVQGKVDTLDGLKENVIVGRLIPAGTGAGMQRMRIAASSRDAALRAAHRKLQESLIAANT
AEEEHAAELAQGPEAAIGNDPLGDVAPSGTGTDADAGEYLND
NT seq
4269 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaactgaccaacttcgcaaacccggtcgccaagccggagacgttcgaccagatt
aagatcggcatcgcctcgccggagcgcatccgttcatggtcgttcggcgagatcaagaag
ccggaaacgatcaactaccgcacgttcaagccggaacgcgacggcctgttctgcgcgcgc
atcttcggtccgatcaaggattacgaatgcttgtgcggcaagtacaagcgcatgaaatat
aagggcatcgtctgcgaaaagtgcggcgtggaagtgaccgtgtcgaaggtccgccgcgaa
cgcatgggtcatatcgaactcgccgcgccggttgcccacatctggttcctgaagtcgctg
ccgagccgcatcggcctgctgctcgacatgcagctgaagcagcttgagcgcgtcctctac
ttcgaatcctatgtcgtcatcgaaccgggcctcaccccgctcgaaaagtatcagctcctc
accgaggacgagctgatcgaggcgcaggacgaatatggcgaagacgccttctccgccggc
atcggcgccgaagccgtcaagcagatgctgatggacctcgacctcgaaggcgagcgcaag
gatctgctggaagagctcgcgaccaccaagtcggagttgaagcccaagaagatcatcaag
cgcctgaaggtcgtcgaaagcttcctcgaatccggcaaccgtccggaatggatgatcctg
gacgtcgttccggtcatcccccccgaactgcgcccgctggtgccgctcgacggcggccgt
ttcgcgacgtcggatctgaacgacctctaccgccgcgtcatcaaccgcaacaaccgcctg
aagcggctgatggagctgcgcgcgccggacatcatcgtccgcaacgaaaagcgcatgttg
caggaggccgtggacgccctgttcgacaatggccgtcgcggccgcaccatcacgggcgcc
aacaagcgtccgctgaagtcgctgtccgacatgctgaagggcaagcagggccgcttccgc
cagaacctgctcggcaagcgcgtcgactattcgggccgttcggtcatcgtgaccggtccg
gaactgaagctccaccagtgcggcctgccgaagaagatggcgctcgagctgttcaagccg
ttcatctactcgcgcctcgacgccaagggtctctcgatgaccctcaagcaggcgaagaag
tgggtggagaaggagcgcaaggaagtctgggacatcctcgacgaagtcattcgcgagcat
ccggtgctcctcaaccgcgcgccgacgctccaccgcctcggcatccaggcgttcgagccg
gtgctgatcgagggcaaggcgatccagcttcacccgctcgtctgcgccgccttcaacgcc
gacttcgacggcgaccagatggccgtgcacgttccgctgagcctcgaggcgcagctcgaa
gcgcgcgtcctgatgatgtcgaccaacaacatcctgtcgcccgccaacggcaagccgatc
atcgttccctcgcaggacatggtcctcggcctctattatctcagcctcgagcgtgagggt
gagccgggcgaagggtcgctgctcagcgacatgcaggaggtccaccaggccctgaacgcc
ggtgccgtcaccctgcactcgaagatcgtcagccgcgttccgcagacggacgaaaacggc
aacacctacatgaagcgcttcgaaacgacgccaggccgcatgctgctcggcgagacgctg
ccgaagagccacaaggtgccgtttgaaaccgtcaaccgccttctcaccaagaaggacatc
ggcgacgtgatcgacgaggtctatcgccacacggggcagaaggagaccgtgctgttcgcc
gacgcgatcatgcagcttggcttccgtcacgccttccgcgccggcatttcgttcggcaag
gacgacatgatcatcccgcacgagaaggaagggctggtcgacgagacccgcgcgctcgtg
aaggattatgagcagcagtatcaggacggcctgatcacccagcaggaaaagtataacaag
gtgatcgacgcctggagccggtgcggcgaccaggtcgcgaacgccatgatggacaagatc
aaggcgcagccgaaggacgagaatggccgcatggccccgatcaactccatctacatgatg
gcgcattcgggtgcccgtggttcgcaggcccagatgaagcagcttgccggtatgcgcggc
ctcatggccaagccgtcgggcgagatcatcgaaacgccgatcatctcgaacttcaaggaa
ggcctcaccgtcctcgaatatttcaactcgacccacggtgcccgcaagggtctggcagac
acggcgctcaagacggcgaactcgggttacctgacccgccgtctcgtcgacgtcagccag
gattgcgtgatcgtcgaggaggattgcaagacctccaacgcactcgaaatgcgggcgatc
gttcagggcggcgcgaccatcgcctccttgggcgagcgtatcctgggccgtaccccgtcc
gaggatatcgtcgacagcaagacgggcgacgtcatcgcccgggaaggcacgctgatcgac
gaaccggcggcgctcaagatcgacgaactgggcatccaggccgtgaaaatccgttcgccg
ctcatctgcgaaagcgtccagggcgtctgcggcaaatgctacggccgtgaccttgcccgc
ggtacgccggtcaatatcggcgaagcggtcggcgtcatcgcggcgcagtcgatcggcgag
ccgggcacgcagctcacgatgcggaccttccacatcggcggtgcggcgcagctcaacgaa
acctcgaacctcgaagcggccgtcgacggcacgatcgagcttcgcgacctgccgacgatc
atggacagccgcggccgccgcatcgcgatggcgcgcaacggcgagctggcgatcgtcgac
atggacggccgcgagcgggcctcgcaccgtatcccgtacggcgcgcacctcctcgtcgat
cacggccatatcgtgtcgaagggcgatcggatcgccgaatgggatccgttcatgatgccg
gtgatcaccgaaaagggcggcaccgtgaagttccaggatctgatcgagggcaagacgctc
accgaacagaccgacgaagcgacgggcatcgcccagcgcgtcgtcacggaattccgcggc
acgtcgcgctcgaaggaagatctgcgtccgcgcatcaccctgctcgacgacaattcgggc
gaggcggcgcgctacatgctctcgccgggcgcgatgctctcggtcgaggacggccaggtg
gttcaggcgggtgaagtgctcgcccgtgtgtcccgcgaagccgccaagacccgtgacatc
accggcggtctgccgcgcgtcgcggagcttttcgaagcgcgcaagccgaaggagaacgcg
atcatcgcgaaggtctccggccgcgtgtcgttcggcaaggactataaggccaagcgcaag
atcgcgatcattcccgaggatgggggcgatcccgtcgagtatctggtgcccaagtcgaag
gttatcgacgtgcaggaaggcgacttcatcaagcgcggcgacaacctgatcggcggctca
cccgatccgcacgacatccttgaagtgctcggcgtcgtggctctggccgaatatctcgtg
tcggaaatccaggaagtctatcgcttgcaaggcgtgaagatcaacgacaagcacatcgag
gtgatcgttcgccagatgctgcagaaggtcgagatcatcgaaagcggcgacaccaccctc
ctcgtcggagagcaggtcgaccttgccgagatgaacgagatcaacgccaagctcggcaag
aaccaggcccgcgccgtcggcaagccggttctcctgggcatcaccaaggcgtcgctgcag
acccgcagcttcatctcggcggcgtccttccaggaaacgacccgcgtcctcaccgaagcc
tcggtgcagggcaaggtcgatacgctggatggcctcaaggaaaacgtcatcgtcggccgc
ctcattccggcgggcacgggcgcggggatgcagcgcatgcgcatcgccgcctccagccgc
gatgccgcgctccgcgccgcgcatcgcaagctgcaggaatccttgatcgccgccaacacg
gccgaggaagagcatgcagccgagctggcccagggcccggaagccgcgatcggcaacgat
cctctgggggatgtcgccccgagcggcaccggcacggacgccgatgcgggcgaatatctg
aacgactaa
DBGET
integrated database retrieval system
