Allosphingosinicella flava: IC614_02665
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Entry
IC614_02665 CDS
T09809
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
sflv
Allosphingosinicella flava
Pathway
sflv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sflv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IC614_02665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sflv03019
]
IC614_02665
Messenger RNA biogenesis [BR:
sflv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
IC614_02665
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
RMMBL
RNase_J_C
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
QPQ55524
UniProt:
A0A7T2LMF6
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All DBs
Position
520223..521860
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AA seq
545 aa
AA seq
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MKPGNELLFLALGGSGEIGMNVNLYGCQGKWIMVDLGLTFADPMYPGVELVLPDLAFIEQ
RKADLLGIVLTHGHEDHIGAIPYLAADLGVPLYATPFTAGLIAGKLDEEGLLGDVKLNVV
EMEGDFQLGPFGLRYVPLAHSIPEGNALLIDTPYGKIFHTGDWKLDDAPQLGDPSTEAEL
RAIGDEGVLALVCDSTNVFNPESSGSEATVREGLDATIQGAKGRVLVTTFASNAARLKTL
GHVAQDTGRKVVVAGRSLDRILRVSKSVGYLTDFPETVDFEAAMDLPRHEVMIIATGGQG
ESRAALARIAFDQHKIKLDEGDLVVFSSKQIPGNEIAIGRIQNELASKGIAMITDRQAEV
HVSGHPGRPELAAMYQWIRPEIIVPVHGEIRHMAEHERFALQCGVPRGIMQKNGDLVRLA
PNGPKKLGEERVGRLILDGNVILAADGSTMNERRKIASFGAIAVALALDGADRVQGDVEI
SLNGVPVEEDREAFLEEACEAAEEAARKNGGNEEKLREAVRLAVRRCATDWTGKKPVVNV
LIVRV
NT seq
1638 nt
NT seq
+upstream
nt +downstream
nt
atgaaacccggtaacgaacttctcttccttgcgctcggcggttcgggcgagatcggcatg
aacgtcaatctctacggctgccaggggaagtggatcatggtcgatctcggcctcacattc
gccgatcccatgtacccgggcgtagagctggtattgccggatctcgcctttatcgaacag
cggaaggccgacctgctcggcatcgtgctcacgcacggtcatgaggatcatatcggcgcc
attccctatcttgccgccgatctgggcgtgccgctctatgcgacgccgttcaccgccggc
ctcatcgcagggaagctcgatgaggaggggttgctcggcgacgtgaaactgaacgttgtc
gagatggaaggcgactttcagctcgggcctttcggcttgcgctacgttccgctcgctcat
tcgatcccggaaggcaacgcgctcttgatcgacacgccctacggcaagattttccatacc
ggcgattggaagctggacgatgcgccgcagcttggcgatcccagcacggaagccgaactg
cgcgccattggcgacgaaggcgtgctcgcgctggtctgcgattccaccaacgtcttcaat
ccggagtcttcgggatcggaagcgacggtccgggaggggctcgacgcgacaatccagggc
gccaagggtcgcgtgctcgtcaccaccttcgcctccaacgccgcgcgtttgaagacgctc
ggccatgttgctcaggataccggccgcaaggtcgtcgtcgcgggccgctcgctcgatcgc
atcctgcgcgtttcgaagagcgtgggctatctgaccgattttccggaaacggtggatttc
gaagcggcgatggatctgcccaggcatgaggtgatgatcattgcgaccggcgggcagggc
gagagtcgcgccgcgctggcccggatcgctttcgatcaacacaagatcaagctggacgaa
ggcgacctcgtcgttttttcctccaagcagattccaggcaatgaaatcgccatcggccgc
atccagaacgagctggcgtcgaaggggatcgcgatgatcaccgaccggcaggcggaggtc
catgtgtcgggccatcccggccgcccggaactcgccgccatgtatcaatggattcggccg
gagatcatcgtgccggtccatggcgaaatccgtcacatggccgaacatgaacgcttcgcc
ctgcaatgcggcgtgccgcgcggcatcatgcaaaagaatggcgatctcgtccggctcgcg
cccaacgggccgaagaaattgggtgaggaaagggtagggcgcctgatcctcgatgggaat
gtcatccttgccgccgacgggtcgacgatgaacgagcggcgcaaaatcgcttccttcgga
gccatcgcagtcgcgttggcgctggatggcgccgatcgtgtccaaggcgatgtcgagatc
agcctgaacggcgtgccggtggaagaggatcgcgaggcatttctggaagaagcctgcgaa
gcggcggaggaagccgcgcgcaagaatggcggcaatgaagaaaagctgcgcgaggccgtc
cgcctcgccgtccgccgctgcgcgaccgactggacgggcaagaaacccgtggtgaacgtt
cttatcgtgcgggtttga
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