KEGG   Allosphingosinicella flava: IC614_02665
Entry
IC614_02665       CDS       T09809                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
sflv  Allosphingosinicella flava
Pathway
sflv03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sflv00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    IC614_02665
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sflv03019]
    IC614_02665
Messenger RNA biogenesis [BR:sflv03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     IC614_02665
SSDB
Motif
Pfam: RNase_J_b_CASP Lactamase_B RMMBL RNase_J_C Lactamase_B_2 Anti-Pycsar_Apyc1
Other DBs
NCBI-ProteinID: QPQ55524
UniProt: A0A7T2LMF6
LinkDB
Position
520223..521860
AA seq 545 aa
MKPGNELLFLALGGSGEIGMNVNLYGCQGKWIMVDLGLTFADPMYPGVELVLPDLAFIEQ
RKADLLGIVLTHGHEDHIGAIPYLAADLGVPLYATPFTAGLIAGKLDEEGLLGDVKLNVV
EMEGDFQLGPFGLRYVPLAHSIPEGNALLIDTPYGKIFHTGDWKLDDAPQLGDPSTEAEL
RAIGDEGVLALVCDSTNVFNPESSGSEATVREGLDATIQGAKGRVLVTTFASNAARLKTL
GHVAQDTGRKVVVAGRSLDRILRVSKSVGYLTDFPETVDFEAAMDLPRHEVMIIATGGQG
ESRAALARIAFDQHKIKLDEGDLVVFSSKQIPGNEIAIGRIQNELASKGIAMITDRQAEV
HVSGHPGRPELAAMYQWIRPEIIVPVHGEIRHMAEHERFALQCGVPRGIMQKNGDLVRLA
PNGPKKLGEERVGRLILDGNVILAADGSTMNERRKIASFGAIAVALALDGADRVQGDVEI
SLNGVPVEEDREAFLEEACEAAEEAARKNGGNEEKLREAVRLAVRRCATDWTGKKPVVNV
LIVRV
NT seq 1638 nt   +upstreamnt  +downstreamnt
atgaaacccggtaacgaacttctcttccttgcgctcggcggttcgggcgagatcggcatg
aacgtcaatctctacggctgccaggggaagtggatcatggtcgatctcggcctcacattc
gccgatcccatgtacccgggcgtagagctggtattgccggatctcgcctttatcgaacag
cggaaggccgacctgctcggcatcgtgctcacgcacggtcatgaggatcatatcggcgcc
attccctatcttgccgccgatctgggcgtgccgctctatgcgacgccgttcaccgccggc
ctcatcgcagggaagctcgatgaggaggggttgctcggcgacgtgaaactgaacgttgtc
gagatggaaggcgactttcagctcgggcctttcggcttgcgctacgttccgctcgctcat
tcgatcccggaaggcaacgcgctcttgatcgacacgccctacggcaagattttccatacc
ggcgattggaagctggacgatgcgccgcagcttggcgatcccagcacggaagccgaactg
cgcgccattggcgacgaaggcgtgctcgcgctggtctgcgattccaccaacgtcttcaat
ccggagtcttcgggatcggaagcgacggtccgggaggggctcgacgcgacaatccagggc
gccaagggtcgcgtgctcgtcaccaccttcgcctccaacgccgcgcgtttgaagacgctc
ggccatgttgctcaggataccggccgcaaggtcgtcgtcgcgggccgctcgctcgatcgc
atcctgcgcgtttcgaagagcgtgggctatctgaccgattttccggaaacggtggatttc
gaagcggcgatggatctgcccaggcatgaggtgatgatcattgcgaccggcgggcagggc
gagagtcgcgccgcgctggcccggatcgctttcgatcaacacaagatcaagctggacgaa
ggcgacctcgtcgttttttcctccaagcagattccaggcaatgaaatcgccatcggccgc
atccagaacgagctggcgtcgaaggggatcgcgatgatcaccgaccggcaggcggaggtc
catgtgtcgggccatcccggccgcccggaactcgccgccatgtatcaatggattcggccg
gagatcatcgtgccggtccatggcgaaatccgtcacatggccgaacatgaacgcttcgcc
ctgcaatgcggcgtgccgcgcggcatcatgcaaaagaatggcgatctcgtccggctcgcg
cccaacgggccgaagaaattgggtgaggaaagggtagggcgcctgatcctcgatgggaat
gtcatccttgccgccgacgggtcgacgatgaacgagcggcgcaaaatcgcttccttcgga
gccatcgcagtcgcgttggcgctggatggcgccgatcgtgtccaaggcgatgtcgagatc
agcctgaacggcgtgccggtggaagaggatcgcgaggcatttctggaagaagcctgcgaa
gcggcggaggaagccgcgcgcaagaatggcggcaatgaagaaaagctgcgcgaggccgtc
cgcctcgccgtccgccgctgcgcgaccgactggacgggcaagaaacccgtggtgaacgtt
cttatcgtgcgggtttga

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