Allosphingosinicella flava: IC614_03960
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Entry
IC614_03960 CDS
T09809
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
sflv
Allosphingosinicella flava
Pathway
sflv02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sflv00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
IC614_03960 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sflv03021
]
IC614_03960 (rpoD)
Transcription machinery [BR:
sflv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
IC614_03960 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DUF4168
Motif
Other DBs
NCBI-ProteinID:
QPQ55754
UniProt:
A0A7T2GKX8
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All DBs
Position
754566..756596
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AA seq
676 aa
AA seq
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MAKTNTVDTADKSEGGDAPLIDLNEASIKKLIARAKKRGVITYDELNDALPQDQMSSEQI
EDIMSALNDMGVNIVENDDSDEEEGGEDAGAEVEEVGEEGTEGERFVIEKKKETVDRTDD
PVRMYLREMGAVELLSREGEIAIAKRIEAGRDTMIWGLCESPITFNAIIEWSTALNEGRM
QLREILDLDAMLSKGPTPEQVESAEDENEDEISEKTAGPSFKEEEEPEEESVDQEEDELT
ERRTPRPTEDEDEDNALSLAAMEELLKPQALEKFASITALFKKFSKLQNARMEAMGAGQD
FPKADENKYQKLSEELTAEVESVQFHQQKIEYLVDQLYSYNRRLTALGGQMLRLAERHKV
PRKAFLDNYMGHELDENWSERVCNLDKKWNAFCTQEAASIERIRTEISEISQATGMSLGE
FRRIVNQVQKAEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD
KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTGRQFLHEFGRE
ATPEDLAERLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAVIPVDAAIQ
ANLKETVTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRK
LKHPSRSRKMRSFLDQ
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagacgaacacggtcgacacggcggacaagagcgaaggtggcgatgccccgctg
atcgacctcaacgaggcgtcgatcaagaagctgatcgcccgcgccaagaagcgcggcgtc
atcacctatgacgaattgaacgatgcgctgccgcaggaccagatgtcgtccgagcagatc
gaggacatcatgtcggcattgaacgacatgggcgtcaacatcgtcgagaatgacgacagc
gacgaagaggaaggcggcgaggacgccggcgccgaagtcgaggaagtcggcgaggaaggc
accgagggcgagcgcttcgtcatcgaaaagaagaaagagacggtcgatcgcaccgacgat
cccgtccgcatgtatctgcgcgaaatgggcgcggtggaattgctgtcgcgcgagggcgag
atcgcgatcgccaagcgcatcgaggccggccgcgacacgatgatctgggggctgtgcgaa
agtccgatcaccttcaacgccatcatcgaatggtcgacggccttgaacgaaggccgcatg
cagctgcgcgagatattggacctcgatgccatgctgtccaagggaccgactcccgagcag
gtcgaaagcgccgaggacgagaacgaggacgagatttccgaaaagacggccgggccctcc
ttcaaggaagaagaggagccggaagaggaaagcgtcgaccaggaggaagacgagcttacc
gaacgccgcacgccgcgtcccaccgaggatgaggacgaggataacgcgctttctcttgcc
gcgatggaagaattgctgaagccgcaggcgctggagaaattcgccagcatcaccgcgctc
ttcaagaaattctccaagctgcagaatgcgcgcatggaagcgatgggcgccgggcaggat
ttccccaaggcggacgagaataaatatcagaagctgagtgaggagctgaccgccgaggtc
gaaagcgtccagttccaccagcagaagatcgaatatctggtcgatcagctctacagctac
aaccgccgcctcaccgcgctgggcggccagatgctgcgcctcgccgagcgccacaaggtg
ccgcgcaaggcgttcctcgacaattatatgggccacgagctcgacgagaattggtcggaa
cgcgtctgcaatctcgacaagaaatggaacgccttctgcacccaggaagcggcttccatc
gagcgtatccgcaccgaaatcagcgagatttcccaagcgaccggcatgagcctgggtgag
ttccggcgcatcgtcaatcaggtgcaaaaagccgagcgcgaggcgcggatcgcgaagaag
gaaatggtggaggccaaccttcgcctcgtgatttcgatcgccaagaaatataccaatcgc
ggcctgcagttcctggacctcatccaggaaggcaatatcggcctgatgaaggcggtcgat
aagttcgaatatcgccgcggctacaagttcagcacctatgcgacgtggtggatccggcag
gcgatcacccgctcgatcgccgaccaggcgcgcacgatccgcatcccggtccacatgatc
gagacgatcaacaagctggtccgcaccggccgccagttcctgcacgagtttggccgcgag
gcgactccggaggatctcgcggaacgtctgtcgatgcctctcgagaaggtccgcaaggtg
atgaagatcgccaaggagccgatcagcctcgaaacgccaatcggcgacgaggaggacagc
cacctcggcgatttcatcgaggacaagaacgccgtcatcccggtcgacgcggcgatccag
gcgaacctcaaggaaaccgtgacgcgcgttctggcctccctcaccccgcgcgaggaacgc
gtgctgcgcatgcgcttcggcatcggcatgaacaccgatcacacgctcgaggaagtcggt
cagcagttcagcgtgactcgtgagcgcatccgccagatcgaagcgaaggcgctccggaag
ctgaagcatccgagccggtcaaggaagatgcggagcttcctcgatcagtaa
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integrated database retrieval system
