Allosphingosinicella flava: IC614_04035
Help
Entry
IC614_04035 CDS
T09809
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sflv
Allosphingosinicella flava
Pathway
sflv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sflv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
IC614_04035 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sflv03400
]
IC614_04035 (mfd)
Enzymes [BR:
sflv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IC614_04035 (mfd)
DNA repair and recombination proteins [BR:
sflv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
IC614_04035 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
MFD_D3
ResIII
UB2H
Cas3-like_C_2
RecG_dom3_C
DR2241
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
QPQ55768
UniProt:
A0A7T2GKX7
LinkDB
All DBs
Position
772184..775645
Genome browser
AA seq
1153 aa
AA seq
DB search
MSDLSKILSAKAPITLAGAPSGFLPWLAADLARAAKGRAVFIAPDEAAMRAIVDAAHYFA
PELETLSFPAWDCLPYDRASPSLRASSERLAALHALQGKPKGPQLLVTTVNAATQRTLTP
FRIRQLVARLAPGERIDRDRLAMLLNANGYVRVESVQDAGEYAVRGGLVDLFPSGEEEAL
RLDFFGDEIETVRRFDPATQRTTGTVEGFTLLPASEALLDEESIKRFRSRYRELFGAAAT
GDPLYQAVSDGRRLAGLDHWLPLFEERLATLFDHLSDDDIVVRDAGDAGAAEARFEAIAD
YFENRKRAQSSDPGSYRPLEPKTLYLTREEWQTLIEDRPLHLTTPFHEPESASVVDFEVD
GPRDFAPERAQNANVYEAVVAHVTALRRSGHKVVLASYTGGARERLKGLLADHGLTKTVE
ANGWQEALGAAAKNQVALTVVQLDHGFTTKDVALLTEQDMLGDRLVRRRKRKKSADAFLS
ELATLSPGDLVVHADHGIGRYEGLTQIPVGTSPHDCVALEYAGGDKLYVPVENIDVLSRY
GSGEEGVTLDKLGGEAWQRRKARMKERIREIANELIKTAAERALRPGVVAEPDTGYAAFV
DRFPYEETDDQDRAIQDVIDDLGAGKPMDRLVCGDVGFGKTEVALRAAFIAAMAGYQVAL
VCPTTLLARQHYNSFKERFQGFPLEIGRLSRLVPAAEAKATKEGLTEGKVDIVIGTHALL
AKGVEFKKLGLVIVDEEQRFGVTHKERLKAMRADVHVLTLTATPIPRTLQMAMSGLRELS
VIQTPPVDRLAVRTYVMPWDPVVLREALLREHYRGGQSYFVVPRIADLPEIEKFLRNEVP
EVRYVVAHGQMAATDVEERMSAFYDRKYEVLLSTTIIESGIDIPTANTLIIHCADRFGLA
QLYQLRGRVGRAKTRAYAYFTTPETRTVTESADKRLQVLANLDSLGAGFQLASHDLDIRG
AGNLLGDEQSGHIKEVGFELYQSMLEDAIVGAKAGDAGLAAGREEFSPQITVDAPIMIPD
DYVPDLDLRMGLYRRMNELETAQEIEEFAAEMIDRFGKLPEATDNLLKIIETKNNCRKAC
IVKLDVGPKGALVSFQNDEFPDLQGLIAYVQRLKGTAKLRPDSKLVITRSWPDPQARING
AVQLSKGLAKILG
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacctttccaagattctttccgccaaggcgcccatcactctcgccggcgcgcct
tcaggcttcctcccgtggctcgccgccgatctggcgcgggccgccaagggtcgcgccgtg
ttcatcgcgcccgatgaagcggcgatgcgggcgatcgtcgacgcagcgcattatttcgcg
ccggaattggagacgctgtctttcccggcttgggactgccttccctatgaccgcgcctcc
ccgtccctgcgcgcttcgtcggaacgtctggccgcgcttcatgcgttgcagggcaagccg
aaggggccgcagctgctcgtcaccacggtcaacgccgcgacccagcgcacgctgacgccg
tttcgcattcgccaacttgtcgcacgcctcgcgccgggcgagcggatcgaccgggatcgg
ctcgcgatgctcctcaatgccaatggctatgtccgggtggaaagcgttcaggacgcgggg
gaatatgccgtgcgcggcggccttgtcgatcttttcccttcgggtgaggaagaggctttg
cgcctcgacttcttcggcgacgagatcgagacggtgcgccgcttcgacccggcgacgcag
cggacgacggggacggtggagggcttcaccctcctccccgcgtccgaggctttgctggac
gaggagagcatcaaaaggttccggtcgcgctaccgcgaattgttcggcgcggctgcgacc
ggcgatccgctctatcaggcggtatcggacgggcggcggctggccgggctcgaccattgg
ctgcccctcttcgaggagcggctggcgaccctgttcgatcatctgtccgatgacgatatc
gtcgtgcgcgatgcgggggatgcgggagcggccgaggcgcggttcgaggcgatcgccgat
tatttcgagaaccggaaacgcgcacaatcgagcgatccgggcagctaccggccgctcgag
cccaaaacgctctacctgacgcgcgaggaatggcagacgctgatcgaggatcggccgctg
catctgacgacgcctttccacgagccggaaagcgcgagcgtcgtcgacttcgaagtggac
ggcccgcgcgacttcgcgccggagcgggcgcagaacgccaatgtctatgaagcggtggtc
gcgcatgtgacggcgctccggcgctcagggcacaaggtggtgttggcgagctatacgggc
ggcgcgcgggagcggttgaaaggcctgcttgccgaccatggcctcaccaagacggtcgag
gcgaatggctggcaggaggcactgggcgcggcggcgaagaaccaggtcgcgctgaccgtc
gtccagctcgaccacggcttcacgaccaaggacgtggccctcctcacggagcaggacatg
ctcggcgaccggcttgtgcggcgccgcaagcggaagaagagcgcggatgctttcctgtcc
gagcttgcgacgctgagccccggcgatcttgtcgtccatgccgatcacggcatcgggcgt
tacgaggggctgacgcaaatcccggtcggtacctccccgcacgattgcgtggcgctcgaa
tatgcgggcggcgacaagctctacgtgccggtcgagaatatcgacgtgctttcgcgctat
ggcagcggcgaggaaggcgtcacgctcgacaaattgggcggcgaggcctggcagcggcgc
aaggcgcggatgaaggagcggattcgcgagatcgcgaacgagcttatcaagaccgccgcc
gagcgcgcgctccgtcccggcgtggtggcggagccggacaccggctatgccgccttcgtc
gaccgcttcccctatgaagaaaccgacgaccaggatcgcgcgatccaggatgtgatcgac
gacctcggggcgggcaagcccatggaccggctggtctgcggcgatgtcggcttcggcaag
accgaagtggccctgcgcgcggccttcatcgcggcgatggcggggtatcaggtggcgctc
gtctgcccgaccaccctcctggcccgccagcattataacagcttcaaggaacggtttcag
ggtttcccgctcgagatcgggcgcctgtctcgcctcgttcccgccgccgaggcgaaggca
acgaaggaaggcctgaccgagggcaaggtcgatatcgtcatcggcacccatgccctcctc
gccaagggcgtcgagttcaagaaattgggtctcgtcatcgtcgacgaggagcagaggttt
ggcgtcacccacaaggaacgcctgaaggcgatgcgggcggacgtgcacgtcctcaccctc
accgcgacgccgatcccgcgcacgctgcaaatggccatgtcgggcctgcgcgaactgtcc
gtcatccagacgccgccggtcgaccgcctggcggtgcgcacctatgtcatgccctgggat
ccggtggtgctgcgcgaggccctgctccgcgaacattatcgcggcgggcaaagctatttc
gtcgtgccgcgcatcgccgacctgccggagatcgagaaattcctgcgcaacgaggtgccg
gaggtgcgctatgtcgtcgcgcacgggcagatggcggcgacggacgtggaagagcgcatg
tccgctttctacgaccggaaatatgaggtgctgctctcgaccacgatcatcgagagcggg
atcgacattccgacggccaacacgctcatcatccactgtgccgaccgcttcggcctcgcc
cagctctatcagctccgtgggcgcgtaggccgggcgaagacgcgggcctacgcctatttc
accacgccggagacgcgcacggtcacggaaagcgcggacaagcgcctgcaggtgctcgcc
aatctcgatagcctgggcgcgggcttccagctggcgagccacgacctcgacattcgcggc
gcgggcaacctgctcggcgacgagcagtccgggcatatcaaggaagtgggcttcgagctt
taccaatcgatgctcgaggatgcgatcgtcggcgccaaggcgggcgacgccggccttgcc
gcgggccgtgaggaattctcgccgcagatcaccgtcgacgcgccgatcatgatcccggac
gattatgtgcccgatctcgacctccgcatgggtctctaccgccgcatgaacgagcttgag
acggcccaagagatcgaggagttcgcggccgagatgatcgaccgcttcgggaaactaccc
gaggcgacggacaacctcctcaagatcatcgagacgaagaacaattgccgcaaggcctgc
atcgtgaagctggacgtgggtccgaagggcgcgctcgtcagcttccagaatgacgagttt
cccgaccttcaggggctgatcgcctacgtccagcgcctgaagggcacggcgaagctgcgg
ccggattcgaagctcgtcatcacccgcagctggccggacccgcaggcgcggatcaacggg
gcggtgcagctgtcaaaggggttggcgaagatattgggatag
DBGET
integrated database retrieval system
