Sphingosinicella flava: IC614_10250
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Entry
IC614_10250 CDS
T09809
Name
(GenBank) CDC48 family AAA ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
sflv
Sphingosinicella flava
Pathway
sflv04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
sflv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
IC614_10250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sflv03019
]
IC614_10250
03009 Ribosome biogenesis [BR:
sflv03009
]
IC614_10250
04131 Membrane trafficking [BR:
sflv04131
]
IC614_10250
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sflv04147
]
IC614_10250
Messenger RNA biogenesis [BR:
sflv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
IC614_10250
Ribosome biogenesis [BR:
sflv03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
IC614_10250
Membrane trafficking [BR:
sflv04131
]
SNARE
SNARE associated proteins
Others
IC614_10250
Autophagy
Aggrephagy
Other aggrephagy associated proteins
IC614_10250
Exosome [BR:
sflv04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
IC614_10250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
AAA_16
RuvB_N
CDC48_2
AAA_22
AAA_5
AAA_33
AAA_2
AAA_14
TIP49
IstB_IS21
AAA_lid_PRS2_C
Zeta_toxin
nSTAND3
AAA_28
Vps4_C
AAA_18
NPHP3_N
RNA_helicase
AAA_3
AAA_7
DUF815
Mg_chelatase
AAA_24
AAA_30
AAA_17
AAA_11
TsaE
Sigma54_activat
ABC_tran
NB-ARC
Parvo_NS1
ATPase
PhoH
bpMoxR
MazE_antitoxin
CPT
Motif
Other DBs
NCBI-ProteinID:
QPQ54699
UniProt:
A0A7T2LLR1
LinkDB
All DBs
Position
2001242..2003542
Genome browser
AA seq
766 aa
AA seq
DB search
MADEELPPNRLQVATMRPDDSGRGLARLPRTMMTALGLGEGDVIELVGKRSTPARAIGPY
SDDEGLDIIRLDGLQRANAEIGAGDFVGIRKAESKPAQRVVFAPAQKNLRLQGSANALKR
SFGMRPVTAGDIVATTGQQQVPRGDLPPELRQMLNAPAYALQEIRLTVVSTMPKGIVHID
ADTEVELRPEYTEAKEMRRADVTYDDLGGIGTTIDQLREMVELPLRYPEIFERLGVDPPK
GVLLHGPPGTGKTRLARAVANESDAEFFHIAGPEIMGSAYGESEKRLREIFEQAGEASPS
IIFIDEIDSIAPKRGQVSGEAEKRIVAQLLTLLDGLEPRQNVIVMAATNRPEALDEALRR
PGRFDREIVIGVPDEPGRREILGIHTRGMPLKPEVDLDELSRKTFGFVGADLAALAREAA
IEAVRRIMPKINLEDGTIPPEVLDTLSVTRNDFEEALKRVQPSAMREVMVQKPNIRWEDV
GGLARVQNRLREGVELPLKDPDAFRRLGIRPAKGFLLYGPPGTGKTLLAKAAAREAEANF
IATKSSDLLSKWYGESEQQIARLFARARQVAPTVIFIDELDSLVPARGGGLGEPQVTERV
VNIILSEMDGLEELQSVVVIGATNRPNLIDPALLRPGRFDELIYVPVPDEEGRRHILSIH
ARNMPLAGDVDLDDLARRTPRFTGADLEDLVRRAGLHALRANLKAGEVTKADFEQALTET
RPSVTAEMEKDYERVEANIKQDAIAGGIGFVLPGMLNSRRAEKHED
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgaggaattaccccccaaccggcttcaggtcgcgacgatgcgcccagacgat
agcggtcggggattggcccggcttccccgcacgatgatgacggcgctcggccttggcgaa
ggcgacgtgatcgagcttgtcggcaagcgttcgacgccggcgcgcgccatcgggccctat
tcggatgacgaagggctggacatcatccggctcgacggcctgcagcgggccaatgcggaa
atcggcgcgggcgatttcgtgggcatccgcaaggctgaatcgaagccggcccaacgcgtc
gtcttcgcccccgcgcagaagaatttgcgtcttcaaggttcggccaacgccttgaagcgc
agctttggcatgcgcccggtgacggccggggatatcgtggcaacgaccggccagcagcaa
gtgccccgcggcgatctgccccccgaattgcgccagatgctgaatgccccggcttatgcg
ctgcaggaaatccggctgaccgtggtgtcgaccatgcccaagggcatcgtccatatcgac
gccgataccgaagtcgagctgcggcccgaatataccgaggccaaggaaatgcgccgcgcc
gacgtcacctatgacgaccttggcggcatcggcacgacgatcgatcagcttcgcgagatg
gtcgagctgccgttgcgctatcctgaaatcttcgagcggctgggcgtcgatccgcccaag
ggcgtgctgctccacggcccgcccggcaccggcaagacgcggctggcgcgcgccgtcgcc
aatgaaagcgacgcggaattctttcacatcgccgggccggaaatcatgggatcggcctat
ggcgaaagcgaaaaacgcctgcgcgagattttcgagcaggcgggcgaggcgtcgccttcc
atcatcttcatcgacgagatcgattccatcgcacccaagcgcggacaagtgtcgggggaa
gccgaaaaaaggatcgtcgcgcagctcctgaccctccttgacggcctcgaaccgcgccag
aacgtcatcgtcatggccgcgaccaaccggcccgaggcgctggacgaagccttgcgccgt
ccgggccgtttcgaccgggagatcgtgatcggagttcccgacgagccggggcggcgcgag
atccttggcatccacacacgcggcatgccgctgaaaccggaggtcgatctcgacgagctt
tcccgcaagactttcggcttcgtcggtgccgatctcgccgcattggctcgcgaggcggcg
atcgaagcggtgcggcgcatcatgccgaagatcaatctcgaggatggcacgatcccgccc
gaagtgctcgacaccttgtcggtcacccgcaatgatttcgaagaagcgctgaagcgcgtc
cagccttcggcgatgcgcgaagtgatggtgcagaagccgaatatacgctgggaggatgtc
ggcggcctcgctcgcgtccagaacaggttgcgcgagggagtcgagctgccgctgaaggat
cccgacgcgttccgccgcctcggcatccgcccggccaagggattcctgctctatggccct
cccggaaccggcaagaccttgctcgccaaggcggcggcgcgcgaggcggaggcgaatttc
atcgcgaccaaatcgtcggatctcctgtccaaatggtatggcgagagcgagcagcagatc
gcccgcctcttcgcccgcgcgcggcaggtggcgccgacggtcatcttcatcgacgaactg
gacagcctggtgcccgcccgcggcggcgggcttggcgagccgcaggtgacggagcgtgtg
gtgaacatcatattgtccgaaatggacgggctggaggaattacagtcggtggtcgtgatc
ggcgcgaccaaccggccgaacctcatcgatccggcgctgttgcgcccagggcggttcgac
gagctgatctatgtgccggttcccgatgaggaaggacggcgccatatcctctccatccac
gcccgcaacatgccgctggcgggcgatgtcgatttggatgatctcgcccgccgcacgccg
cgtttcaccggtgccgacttggaagatctggtccgccgcgcgggcctccatgccctccgt
gccaatttgaaggcgggcgaagtgaccaaggcggatttcgaacaggcgctgaccgaaacg
cggccgtccgtgacggcggaaatggaaaaggattacgaacgggtcgaggcgaatatcaag
caggatgcgattgcgggcggcatcggcttcgtgttgcccggcatgctcaattcgcgccgc
gcggagaaacatgaagattga
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