Sphingosinicella flava: IC614_12055
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Entry
IC614_12055 CDS
T09809
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sflv
Sphingosinicella flava
Pathway
sflv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sflv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IC614_12055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sflv03019
]
IC614_12055
03009 Ribosome biogenesis [BR:
sflv03009
]
IC614_12055
Enzymes [BR:
sflv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
IC614_12055
Messenger RNA biogenesis [BR:
sflv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
IC614_12055
Ribosome biogenesis [BR:
sflv03009
]
Prokaryotic type
rRNA processing factors
IC614_12055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
QPQ55019
UniProt:
A0A7T2GJI3
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All DBs
Position
2367752..2370331
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AA seq
859 aa
AA seq
DB search
MTMRMLIDARHQEETRVAVVKGNRIEEFDFESAEHKQLKGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFSEIHPDYYQIPREDREALLREEAEHAAEEERLRAAEDSRWDDDGDHDDG
DFDGVEEVGESAEDEHHDDMPPAHAEHNRPEENAADELRKKRQALRRRYKIQDVIKRRQV
LLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTSHGGGISRKISNGADRKRLKAIMADL
NLPRTMGCIVRTAGLQRTKTEIKRDFDYLARLWDQIREKTLQSAAPALIYGDSDLIKRAI
RDIYNRDIDEVIVEGDEGYKHARAFMKLLMPSHMKKVRGYADPVPLFQRYGVEDQLAGMY
QPLVQLKSGGYLVINPTEALVSIDINSGRSTREHNIEQTAYATNIEAANEIARQLRLRDM
AGLVVIDFIDMEQNGHVRKVEKAMKEALKNDRARIQVGRISSFGLMEMSRQRLRTGVLEA
STKPCPHCEGSGLMRTASSAGLSALRMIEDEAARGRGNRIVLRAGREAAIYVLNRKRAEI
AEVEERYGVIVEVMIDETFEGAKMSVEATGPRPEKRYEPAVSAPAIDEEELIEEFEEEEE
EADEQEEREEREERRSGRERGGRGRRGDRAERAERPERPDHPESGEHPEHDEEDEGERRG
RRRRRRGRRGGRRRNGQEGEIEANEAVTETPEVEAAPEPAAEAVEAEDGDKPRKSRRRPR
ARKKGDAEATVETAIEVQPEPAPEAAPEPVAEEAPAKPKRSRRKKADAAADGAAEAAPAE
AAPEPAPVAANDAAEADDAPAKPKRTRRKKGDAGPAAAPEGPAIDRQEAAVSSAGSAEDN
DAAETGEPRRGWWQRTFGG
NT seq
2580 nt
NT seq
+upstream
nt +downstream
nt
atgaccatgcgtatgctgatcgacgcacgccaccaggaagaaaccagggtggccgtcgtc
aagggaaaccggatcgaggaatttgatttcgaatccgccgagcacaagcagctcaaggga
aatatctatctcgccaaggtaaccagggtcgaaccgtcgctgcaggcggccttcgtcgat
tatggcggcaaccgccacggcttcctggccttcagcgaaatccacccggattattatcag
atcccgcgcgaggaccgcgaggccctgctccgcgaggaagccgagcatgctgccgaggaa
gagcgcctgcgcgccgccgaggacagccgctgggacgatgacggcgatcacgacgatggc
gacttcgacggcgtcgaagaagtaggcgagtccgccgaggacgagcatcacgacgacatg
ccgcccgcccatgccgagcataatcgtccggaagaaaatgccgccgacgaattgcgcaaa
aagcgccaggcactgcgccgccgctataagatccaggacgtcatcaagcgccgccaggtt
ttgctcgtccaggtcgtgaaggaagagcgcggcaacaagggcgcggcgctcaccacctat
ctctctctcgccggccgctattgcgtgctgatgccgaacaccagccatggcggcggcatt
tcgcgcaagatttcgaacggcgccgaccgcaagcgcctcaaggccatcatggccgatctc
aacctgccccggacgatgggctgcatcgtccgcaccgcgggcctccagcgcaccaagacc
gagatcaagcgcgacttcgattatctcgcgcggctgtgggatcagattcgcgaaaagacg
ctgcaatcggcggcgccagcgctcatctacggcgacagcgatctcatcaagcgggcgatc
cgcgacatctacaatcgcgacatcgacgaggtgatcgtcgagggcgacgagggctacaag
catgcccgcgccttcatgaaattgctgatgccgagccacatgaagaaggtgcgcggctat
gccgatccggtgcccctcttccaacgctacggggtcgaggatcagcttgcgggcatgtac
cagccgctcgtccagctgaagtccggcggctatctcgtcatcaacccgaccgaggccctg
gtctcgatcgacatcaactccggccggtcgacgcgcgagcataatatcgaacagacggcc
tatgcgaccaatatcgaggccgcgaacgagatcgcccgccagctgcgcctgcgcgacatg
gcgggcctcgtcgtcatcgactttatcgacatggaacagaacggccatgtccgcaaagtc
gagaaggcgatgaaggaggctttgaagaacgaccgcgcccgcatccaggtcggccgcatc
tcgtcctttggcctcatggaaatgagccgccagcgcctgcgtaccggcgtgctcgaagcc
tcgaccaagccctgcccgcattgcgagggctcgggcctgatgcgcaccgcctcctcggcg
ggcctgtcggcgctgcgcatgatcgaggacgaagcggcccgcggacgcggcaaccgcatc
gtgctgcgcgccggccgcgaagccgccatctatgtcttgaacaggaagcgggccgagatc
gccgaggtcgaggaacgttatggcgtcattgtcgaagtgatgatcgacgagacgttcgaa
ggcgccaagatgagcgtggaggccaccggcccgcgccctgaaaagcgctacgaacccgcc
gtttccgcaccggccatcgatgaggaagaactcatcgaggaattcgaggaagaggaagaa
gaagccgacgagcaggaggagcgcgaagaacgcgaagagcgccgctccggccgtgagcgc
ggcggacgcggcaggcgcggagaccgtgccgagcgcgctgagcgccctgagcgtccagac
catcccgaaagcggcgaacatcctgaacatgatgaggaagatgaaggcgaacgccgcggc
cgccgccgccgccgcaggggccgccgaggcggacggcgcaggaacggtcaggaaggcgaa
atcgaggcgaacgaggccgtaaccgagactccggaagtcgaagcggcgccggaaccggcc
gccgaggccgtcgaagccgaggacggcgacaagccgcgcaagtcgcgccgccgtccgcgc
gcgcgcaagaagggcgatgcggaggccaccgtcgagaccgcgatcgaggttcagccggaa
ccggcacccgaagccgcacccgaacccgtcgcggaagaagcgcccgccaagccgaagcgc
agccgccgcaagaaggccgatgccgcggccgacggcgccgccgaagccgctccggccgaa
gccgcccccgaacccgcgccggtcgccgccaatgacgcggccgaagccgatgacgctccg
gccaagcccaagcgcacccgccgcaagaagggcgatgccggaccggccgccgccccggaa
gggcccgccatcgaccgtcaggaagccgcggtatcctccgctggaagcgcggaggacaat
gacgcggccgaaaccggcgaaccgcgccgcggctggtggcagcgcactttcggcggctga
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