Scleropages formosus (Asian bonytongue): 108918090
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Entry
108918090 CDS
T04919
Symbol
col13a1
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X1
KO
K16617
collagen type XIII alpha
Organism
sfm
Scleropages formosus (Asian bonytongue)
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sfm00536
]
108918090 (col13a1)
Glycosaminoglycan binding proteins [BR:
sfm00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108918090 (col13a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
108918090
NCBI-ProteinID:
XP_018580563
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Position
8:8737031..8833228
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AA seq
729 aa
AA seq
DB search
MEDNQKLVAASKARVGRTCGEHPCRKASRGSSRELIGVAACCALSLLSLGVCFLVHLRTS
ELQSRVLNLERERDTRLSAWFSPDHQVEPVILGRLDQMLEEKLAARLPRTREAREAPHSC
ICPPGPAGPPGRAGFPGDKGAMGIPGRLGLKGAAGEKGAPGEPGLSIIGPRGPPGQPGTR
GFPGFPGPIGLDGKPGQNGMKGDMGPRGPKGMPGEPGPKGEKGVCGEYSHRKRRIVQTCV
GGLATQGEPGAQGPPGPPGPPGPPGLPGSPGVAGVNGAPGKPGEPGKPGKDPRTLPGMKG
EPGTPGQKGDRGDAGPQGPHGPQGEKGEPSTAGIGIKGEPGMPGSPGPVGPAGPQGNKGE
PGSKGETGPEGPSGPRGPPGPAGEPGKSEIIDYNGTFNKKLMDSLNLPLMGPPGPPGPPG
LPGAPGSKGEVGLPGPPGLDGEKGPRGKPGDTGPMGPPGPEGPRGENGLVGFSGQKGEKG
DIGPAGSPGLDGPTGEKGVAGPSGPIGIPGLMGQKGEPGEKGVASDKVYGPPGPPGPPGP
QGPIGPMGPPGQLGPKGEPGIGIKGDKGGIGPKGEKGDRGHLGLPGAHGLDGKPGPVGLI
GPVGIQGPAGPKGERGDKGDPGVPGPSGPPGIPGSVGPQGIKGNRGERGKKGNRGAKGDK
GDQGAPGLDAPCPLVCPSFNVHLVGQEEGEQQVAVRHQMTNKHQTRYDLSYSRDQMYNTA
SLSLLQIHI
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atggaagacaaccagaagctggtagccgcttccaaagcacgagtggggaggacatgcgga
gagcatccctgcagaaaagcgtcccggggaagctccagggagctgattggcgtggcggcg
tgctgcgcgctctcgctgctctccttgggggtttgctttctcgtgcacctgaggacgtcg
gagctgcagtccagggttttgaatctggagcgggagcgggacaccaggctgtccgcgtgg
ttctcgcccgaccaccaggtagagccggtcattctggggagactcgaccaaatgctggaa
gagaagctggcagcgaggttgcccaggacacgagaagccagagaagcccctcacagctgc
atctgcccaccaggacctgctggtcctcctggacgagctggctttccgggtgacaaagga
gcaatgggaatacctggaagactggggttaaagggtgccgctggggagaagggggcacca
ggcgagccaggattgtccattattggtccacgcggtcccccgggacagcctggaaccaga
ggatttccaggatttccaggtccaattggattggatggaaaaccaggacaaaatggaatg
aaaggagacatgggtcccagaggtccaaaaggaatgcctggtgaaccagggcccaagggg
gaaaagggcgtatgtggagagtactctcataggaaacggcgcattgtacagacctgtgtt
ggaggattggccacacagggtgaacctggagcccagggccctcctggacctccaggacct
cctggaccccctggtctgcctgggagcccaggagtggctggcgtcaatggtgccccgggg
aagccaggcgagccagggaaaccaggaaaagacccacggacactgcctggaatgaagggt
gagcctgggacacctggacagaagggagatcgcggtgatgctggtcctcaaggaccccat
ggtccccagggggaaaagggggagcccagcacggcaggcatcgggattaaaggagaacca
gggatgccaggatccccaggacctgtcggacccgcaggaccacagggcaataaaggagag
ccagggtcaaagggtgagactggacctgaggggccatctgggccaagaggtcctccaggt
ccagctggtgagccaggaaaatcagaaatcatcgactacaatggcaccttcaacaaaaaa
ctcatggatagtctgaacctacctttgatgggccctccaggacccccaggcccccctgga
cttcctggagcaccaggttcaaagggagaagttggattaccaggtcctccaggacttgat
ggggaaaagggaccaagggggaagccaggagacacagggccaatgggacctccagggccc
gaagggcctagaggggagaatggtcttgtgggcttttctgggcagaaaggtgaaaaaggg
gacataggtcctgctggatcccctggtctggatggtcctactggtgaaaagggggttgct
gggccatcaggtcctattggaataccaggcttaatgggccaaaagggtgaacctggggag
aaaggagtggcttcagataaggtctatggacctccagggccacctggacctccaggacca
caagggcccattggccctatgggccccccaggacagttaggtccaaagggggagcctggc
attggcataaaaggagacaaaggaggaattgggccgaagggggagaaaggggataggggg
caccttggccttcctggagctcatggtttagacggcaagcctggtccagtgggtctaatt
ggaccggtaggtattcaaggaccagcaggaccaaaaggggagaggggtgacaaaggagat
ccaggtgtaccaggaccaagcggcccaccaggcatccctggttcagtaggaccacaagga
ataaaagggaaccggggagagaggggcaagaaaggcaacaggggggccaaaggggataag
ggagaccaaggagcacctggattagatgccccctgtccgttggtatgtccttcgttcaat
gtgcacttggtggggcaagaggaaggggagcagcaggtagctgtcaggcatcaaatgaca
aataagcaccaaaccagatatgatctgtcatacagcagagaccagatgtataatacagct
agcctctcactcctacaaatacatatttga
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