Scleropages formosus (Asian bonytongue): 108918542
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Entry
108918542 CDS
T04919
Symbol
smarcc2
Name
(RefSeq) SWI/SNF complex subunit SMARCC2 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
sfm
Scleropages formosus (Asian bonytongue)
Pathway
sfm03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108918542 (smarcc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sfm03021
]
108918542 (smarcc2)
03036 Chromosome and associated proteins [BR:
sfm03036
]
108918542 (smarcc2)
Transcription machinery [BR:
sfm03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
108918542 (smarcc2)
Chromosome and associated proteins [BR:
sfm03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
108918542 (smarcc2)
PBAF complex
108918542 (smarcc2)
GBAF(ncBAF) complex
108918542 (smarcc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM-assoc_3
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
Motif
Other DBs
NCBI-GeneID:
108918542
NCBI-ProteinID:
XP_018581431
LinkDB
All DBs
Position
22:7552558..7570657
Genome browser
AA seq
1094 aa
AA seq
DB search
MAVRKKDGGPNVKYFEASDTVSQFDNVRVWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
EEVFGRHVSNPPLTKLPMKCFLDFKSGGALCHILAAAYKFKSDQGWRRFDFQNPSRMDRN
VEMFMTIEKSLVQNNCLSRPVIFLSSDIEPKLLGKLKDIIKRHQGSVTEDKTASSHVVVP
IPASLEEEEWVRPVMKRDKQVLLHWGYSPDSYDTWIPASEVEAAVEDPPTPEKPRKVHAK
WILDLDQFNEWMNEEDYEVGEGLPRRKRISAKTLTDEVSPPDERRDRKPGSTKKRKRSPS
PSPPPAPQESKKKNTKKGPTTPYTKSKRGHREEEQEDLTKELDEPSPVPAVEEVTLPKNV
NTKKDSESTPVKGGTMTDLDEQEDESMETVGKEEEEGSPSVKGEPVKSSDLHEDNVTEQT
HHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYL
TSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHFHVLADTPSSL
VPLQPKASQTPASQQLLSFPEKVKEKPADLQNFGLRTDMYSKKSGPAKSKSAASATREWT
EQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDSSCSLGPLAFQ
PVPFSQAGNPVMSTVAFLASVVDPRVASAAAKSALEEFSRMKEEVPAALVEAHIRRVEEA
ARTSGRQDPLFGLEGSGIAGTDLEEGERPGEIEGEGGTARLLNLEQGVLPMWCCVMLLCL
FFPEERSEENKSDSQPSEEKRESKESKEPAIDEEDRQGENGKKEEDRERDEEGEREGEKA
DSEMGDVEKEKEGKEGSEEGRRDGESEGERKAKVERDIGEGNLATAAASALAAAAVKAKH
LAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREREALEYQRQQLLADRQSFH
MEQLKYAEMRARQQHFQQIQHQQHSQTPVQHPASVPPAPPQGIPGSQPGPGTPGPQPAPS
PAPPSSVGNPMAGPHAAQSQEPQQTTAQHISPPAPPSQPPGPQATSTPTSALHESGAALP
HDALHSAPPALPPQ
NT seq
3285 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcggaagaaagacggcggcccgaatgtaaaatatttcgaagcatccgacacg
gtttcgcagttcgacaatgtccgcgtctggttgggcaagaattacaaaaagtacatccag
gccgagccgcccaccaacaagtccctttccagcctggtggtccagctcctgcagttccag
gaggaagtgtttgggcgacatgtcagcaatccccctctcactaaactcccgatgaagtgt
ttcctggattttaagtcaggaggagcactctgccatatcttggctgctgcctacaagttc
aagagcgaccaggggtggaggaggtttgacttccaaaacccatctcgaatggaccgtaat
gttgagatgtttatgaccattgagaaatctctggttcagaataactgtctcagtcggcca
gtcatttttctcagttcagacattgaacccaaactgctggggaaactgaaggacatcata
aaacggcatcagggctcagtcacagaagacaaaaccgcaagttcccacgttgtggttcct
ataccagccagcttggaagaagaagaatgggtccgcccggtgatgaaaagggacaagcag
gtacttcttcactggggatactctcctgacagctacgacacctggattcctgccagtgag
gtggaggcagcagtagaggatcctcccaccccagagaagcccaggaaggtccatgccaag
tggattcttgacctggaccagttcaatgaatggatgaatgaagaagattacgaagttgga
gaggggctccccaggaggaagaggatttcagccaaaaccttaactgacgaagtgtcccca
ccggatgagcgccgggacaggaagccaggaagtacgaagaagaggaagcgctcaccctcc
ccatccccacccccagccccccaggagagcaagaagaagaacaccaagaaggggcccaca
accccttacacaaaatcgaagcgcggccaccgcgaggaggagcaagaggacctaacaaag
gaactggatgaaccctcacctgtgccagctgtggaggaagtcactcttccaaagaatgtg
aacactaaaaaagactcagaatcaacaccagtgaagggtggaactatgacagaccttgat
gagcaagaggatgaatccatggaaacagttggaaaggaggaggaagaaggttctcctagt
gtgaaaggcgagccagtgaaaagctctgacctccatgaagacaatgtgactgaacagacc
caccacatcatcatccccagctatgcagcctggtttgactacaatagtgttcatgctata
gagcggcgagcccttccagaattcttcaatggcaagaataagtcaaagactcctgaaata
tacctggcctacaggaattttatgatcgacacataccgtctcaacccccaagagtacttg
acttccactgcctgtcgtcgtaatctggcaggagatgtgtgtgccatcatgagagtccat
gccttcctagagcagtggggtctcatcaactaccaggttgacgctgaaagccgaccaact
cccatggggcccccacctacctcccacttccatgtccttgctgacactccctccagtcta
gtgcccctgcaacccaaggcttcacagaccccagcttcccagcagctgctgtcctttcca
gagaaggtgaaggaaaagccagctgatctgcagaactttggactgaggactgacatgtat
agcaagaagagtgggcctgccaagagtaaaagcgctgccagcgccactcgagaatggaca
gaacaagaaacactactactgctggaggcactggagatgtacaaggatgactggaacaag
gtatcagagcacgtaggtagccgtacgcaagacgagtgtatcctgcacttcctgcggctt
cctattgaggacccctacttggaagacagctcctgctctttggggcccctggccttccag
cctgtgccctttagccaggctggcaaccctgtcatgagcaccgtggccttccttgcctct
gtggtggacccccgagtggcctctgctgcagcgaagtctgctctggaggagttctcacga
atgaaggaggaggtgccggcagccctggtggaggcccacatcaggagagtggaagaggcg
gctcgaaccagcgggaggcaagacccattgtttggcctggaggggagtgggattgctggc
actgacctggaggagggagagaggcctggtgagatagagggagagggaggtacagccaga
ctgctgaacctggagcaaggtgttctaccgatgtggtgttgtgtcatgcttttgtgtttg
ttttttccagaagaaagaagtgaggagaacaagagtgacagtcagcccagtgaagagaag
agggagagcaaagagagtaaagagcctgccattgatgaggaagacaggcagggtgaaaat
gggaagaaagaagaagacagggaaagagatgaagagggggagagagaaggagagaaggca
gactcagaaatgggtgatgtagagaaggagaaagaagggaaggaggggtcagaggaagga
agaagagatggcgagagcgagggagagaggaaggccaaagtagagcgagacattggagag
ggcaacctggccaccgctgctgcctctgctctggctgctgctgctgttaaagctaagcat
ctggctgcagtggaagagaggaagatcaagtctctagtggctctactggtggagacccaa
atgaagaagttggaaatcaagctgagacattttgaggagttggagaccatcatggacaga
gaaagggaagcgctggagtaccagcgtcagcagctgctggctgaccggcagtccttccac
atggagcagctcaagtacgctgagatgcgggccaggcagcagcacttccagcaaatccag
caccagcaacacagccagacgccagtgcagcatcctgcatctgttccacctgcacccccg
caggggatacctggctcccagccgggccccggcacccctgggcctcaaccagctcccagt
ccagcgccaccctcgtctgttggtaatcctatggctggaccccatgctgcccagtcacag
gagccccagcaaaccacagctcagcacatttcacccccagccccacccagtcagcccccg
gggcctcaggccacttccacgcctacatcagcactccatgagtcaggtgctgctttgccc
catgatgcccttcactctgctcccccagctctccccccacagtga
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integrated database retrieval system
