Scleropages formosus (Asian bonytongue): 108919351
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Entry
108919351 CDS
T04919
Symbol
nrde2
Name
(RefSeq) protein NRDE2 homolog isoform X1
KO
K26109
nuclear exosome regulator NRDE2
Organism
sfm
Scleropages formosus (Asian bonytongue)
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfm03019
]
108919351 (nrde2)
Messenger RNA biogenesis [BR:
sfm03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
108919351 (nrde2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NRDE-2
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
TPR_14
Suf
TPR_19
Dsh_C
Motif
Other DBs
NCBI-GeneID:
108919351
NCBI-ProteinID:
XP_018582794
UniProt:
A0A8C9RQF9
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All DBs
Position
15:complement(16631958..16642477)
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AA seq
1143 aa
AA seq
DB search
MALFPAFSSVSATSSASEKAKELDWLSNRSFCSDDALTIHQHVQDRILPERQEDSETGVP
TLKKLKEDEENDYSHKKRRKKEKKKKHKKHKTKHGEHAEGSGSESDTVYPSDLVKQEADT
ASREEKVSTQGSFIWLDDLTAPTDRPFCIDKKADSANWEYKSLYRGDIPRYKRKGNSSLG
LDPATQAVTWTDTKTSEKKRGDRTSERYFSRSCQQLLNTVDLSVVTGSRGSGPNLTAVRF
IPVPQCLEEEGSADTPQVPSAVNPLGVYDSSTSLWLQGKGRQEPGLQKEEGSAVTSRGGS
SSTALMAARVEDFNRRLRENPSDIPTWLEFVHFQDELTAGPSPFSGSEGDVDRCKKSLKM
TLEKKMAILERALESNPGSVELKLARLDLGRELWDPAALLREWRQLVFLHPNNAELWRAY
LLFIQGQFSTLTVSKVNGVYGKCLSTLASVQDGALVSHPALPGTEEAMLVIFLQQCHFLR
QAGHSEKAIALFQAMLDFTFFKPDSVKEMHTKQQVEFFEPFWDSGEPRIGEKGARGWKAW
MHQQERGGWVIPSEPDDDDDDDQDDGSEVKDKTWPKWRIWLDVEASREANHWLPWRPDKT
KGQSEEDCEDPDQQVLFDDVGPSMILLSKPELRFQLLCSFLRFLGLPCDMDYPCGPSWSI
LLDNLALLVEELDADRPLSCSDLWQAGVSPVGHMTTLGAPRRMVGLCKQGEEFMQNVLHQ
LWPLLSASERSKLSLYWIQYEKIKVMRCVRSRNKRHMRSQGKRSKKVAKRLLKEAENRND
LALWREFGHLEWLLGNLEEARKVLDTALSLGLSRGLQDRALCDLCLLYAQLEVEQGVGPT
AGTASPTLHILTRLAEGGTYSPFSGQVSPVSILKARRTFEQAQETNCRPGLVGCFALFQY
LTVGVEAADKVYQQAMERLEERHTDHQEEILGEVNSELEALSVARASLLRHVASACPLSR
LRDALTSALSHFPNNSHLWKLYLSAENRYHNAGRARRFLHTLTCRATSAIPRLFAISAEQ
KRKELVDTVQRSDRYGDVRATLPETGLKHRIRALFESAVATEHGSRCPLLWRMYIHFLVL
EGNVDRGRGIFYRALQNIPWVKGLYMDAVLLFPDHVQEFLDLMQEKELRLRLPMEEVDIL
LED
NT seq
3432 nt
NT seq
+upstream
nt +downstream
nt
atggcgctttttccagctttttcgagtgtttcagcaacgagctcagccagcgaaaaagcc
aaagagctggactggctgagcaataggagtttctgctcagatgatgcccttactatccac
cagcatgtccaggacaggattttgcctgagagacaagaggactcagagacaggtgttccc
actttaaaaaagctaaaagaggacgaggagaatgactacagtcataagaaaaggagaaag
aaggaaaagaagaagaagcacaaaaagcacaagacaaagcatggggagcatgcggagggc
agcggctctgagtcagacaccgtgtatcctagtgatctcgtcaaacaggaagctgacact
gcaagccgtgaagaaaaagtttcaacccagggttccttcatctggctcgatgacctaact
gcccccacggaccgcccgttctgcatcgataagaaggctgattctgctaactgggagtac
aagtcactgtaccgaggagacatccccaggtacaagcgcaagggaaattcctctttggga
ctagaccccgcgacccaggccgtgacctggaccgataccaagacctcagagaagaagcga
ggggacaggacgtcagagcgttacttctcgcggagttgccagcagttgctgaacactgtg
gacctgtcggtggtgactggctcccgtggatcagggccaaacttgactgccgtccgtttc
attcctgttcctcagtgcctggaggaggagggcagtgctgacaccccccaggtcccctct
gcagtcaaccccttgggggtgtacgactcttctacctcattgtggctgcagggtaaaggt
cggcaggagccaggcctgcagaaagaggagggctctgctgtcacgtcaaggggtggtagc
agcagcacggctctgatggctgcaagagtggaagacttcaaccgcaggttgcgtgagaat
ccatctgacatacccacgtggttggagtttgtgcatttccaggatgagctgactgctggt
ccaagccccttctcaggttctgagggtgatgtagatagatgtaaaaagtccctgaagatg
acactggaaaaaaagatggccatcctggagagggcgctggaaagcaacccgggcagtgtg
gaactgaagctggcacgattggacctgggtcgggagctgtgggatccagctgcactgctt
cgcgagtggaggcagttggtcttcctgcaccccaacaacgcagagctctggagggcctat
ctgctcttcatccaaggccagttcagcacgctcactgtctccaaggtcaatggcgtctat
ggcaagtgcctaagcacgttggcgtccgtgcaggacggtgccttggtgtcccatcctgcc
ctgcctggcaccgaggaagccatgctggtcatcttcctacaacagtgccacttcctcaga
caggcgggacattcagagaaagcaatcgcgctcttccaggccatgcttgacttcaccttc
ttcaagcctgacagcgtaaaggagatgcacacaaagcagcaggtggagttcttcgagccc
ttctgggacagcggggagccacggattggcgagaagggcgcacggggctggaaggcctgg
atgcaccagcaagagagagggggctgggtcatccccagtgagccagatgatgatgacgat
gatgaccaagacgacggatccgaggtgaaggataaaacctggcccaagtggcgaatctgg
cttgatgtcgaggcttctcgggaggccaaccactggctgccatggagacctgacaagacc
aaaggccagtccgaggaggactgtgaggaccccgatcaacaggtcctgtttgatgatgtg
ggaccctctatgattcttctctcaaagcctgagctccgcttccagctgctctgctccttc
ctgcgtttcctagggcttccgtgtgacatggactatccctgcgggccctcttggagtatc
ctactggacaatctcgcactactggtggaggagctggatgcagacagacctctgagctgc
tctgacctctggcaggctggggtcagcccggtgggtcatatgaccaccctgggtgcacct
agaaggatggtgggtttgtgcaagcaaggagaggagtttatgcagaatgttctccatcag
ctttggcccctgctgtctgcctcagagaggtccaagctctcactctactggatacagtat
gagaagatcaaggtgatgcggtgtgtccgcagcaggaacaagcggcacatgagatcccaa
ggtaagcggagcaagaaggtggccaagcggctgttaaaggaagcggagaaccgcaatgac
ctggcactgtggagggagttcggccacctggagtggctgctggggaacctggaggaggcc
cggaaggtgttggacacagccttgtcactgggactatcccgtggcttacaggaccgtgcc
ctgtgtgacctctgcctactctatgcccagctggaggtggagcagggggtggggccaaca
gctggaacagcttcccccacgcttcacatcctcacgcgtctggctgaaggtgggacgtac
tcccccttcagtggccaagtgtcccctgtgtccatcttgaaggcccggcggacctttgag
caggcccaagaaaccaactgccggcctgggcttgttggctgcttcgccctcttccagtac
ttgaccgtgggtgtggaggccgcagataaagtataccaacaggccatggagcggctggag
gaaaggcacacagaccatcaggaggagatacttggcgaggtcaactcggagctggaggca
ctctctgtggcacgcgcctcgttgctacggcatgttgccagcgcgtgcccactgagccgc
cttcgcgatgccctcacctctgccctctcccatttccctaacaactcccacctgtggaag
ctgtacctgtcggcagagaacaggtaccacaacgctggccgcgcccgccgcttcctgcac
accctcacttgtcgtgccacaagtgccatccctcggttattcgccatcagcgctgagcag
aaaaggaaggagctggtggacacagtgcagaggagtgatcgttacggggacgttcgggcc
actttaccggagactgggctgaaacaccgcattcgagcgctgttcgaaagtgcagtggcc
accgagcacgggtcccgctgccccctcctctggaggatgtacatccacttcctggttctg
gaggggaatgtcgacaggggcagagggatcttttacagagctctgcagaacatcccttgg
gtaaagggcctctacatggatgccgttctgctgttccctgaccacgtgcaggagttcctc
gacctcatgcaggagaaggaactgcggcttcgtctgcccatggaggaggtggacatccta
ctagaggactag
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