Scleropages formosus (Asian bonytongue): 108919652
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Entry
108919652 CDS
T04919
Symbol
vps39
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
sfm
Scleropages formosus (Asian bonytongue)
Pathway
sfm04140
Autophagy - animal
sfm04148
Efferocytosis
sfm05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
108919652 (vps39)
04148 Efferocytosis
108919652 (vps39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
108919652 (vps39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sfm04131
]
108919652 (vps39)
Membrane trafficking [BR:
sfm04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
108919652 (vps39)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
WD40_like
Beta-prop_RIG_2nd
UN_NPL4
Motif
Other DBs
NCBI-GeneID:
108919652
NCBI-ProteinID:
XP_018583349
UniProt:
A0A8C9RBS3
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Position
15:13382446..13394963
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AA seq
876 aa
AA seq
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MHDAYEPVPILEKLPLQIECLAAWEDWLLVGTKPGHLLLYRIKKDAGTNRFEVTLEKSNK
NFSKKIQQLFVVSQYKILVSLLENNIHVHDLLTFQQITVVSKARGATLFSCDLQQSSSSE
AQLRMCVAVKKKLQLYYWKDREFHELQGDFAAPDIPKSMAWCENSICVGFKRDYYLIRVD
ARGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEDGVCTQKCALNWTDIPIAME
HQPPYIIAVLPRYVEIRTFEPRLLVQSVELQRPRFITSAGPNIVYVASNHFVWRLVPVSI
ATQIRQLLQDKQFELALQLAKMKDDSDGDKRQQIHHIQNLYAFNLFCQKRFDDSMQVFAK
LGTDPTHVIGLYPDLLPSDYRKQLHYPNPLPTLSGAELEKAHLALIDYLTQKRSHLVKQL
NDSDPSTTSPLMEGTPTIKSRKKLLQIIDTTLLKCYLHTNVALVSPLLRLENNHCHIEEC
EYVLKKAHKYSELIILYEKKGLHQKALQVLLDQSTKANSPLKGHERTVQYLQRLGSENLG
IIFEFSPWVLKACPEDGLKIFTEDLTEVETLPRDKVLNFLKEGFKELAVPYLEHIIHVWE
DTSPEFHNVLIQLYLEKVQGLMKDYLCSLPTGVPPVAAGKEEGDLGEFRNKLLNFLEISS
SYEPTRLISDFPFDGLLEERALLLGRMGKHEQALFIYVHILKDTRMAEEYCHRHYDRVTE
GNKDVYLSLLRMYLSPPDVRCLVPIMMDLPEPQANLQAALHVLELHHSKLNTTKAINLLP
ANTQIREIRVFLESVLEENAQKKRFNQVLKSLLQAEFLRVQEERIFHQQVKCIITEEKTC
RVCKKKIGNSAFARYPNGVVVHYFCCKDRNTCPAEL
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgcgtacgagccggtgcccatcctggagaagctgcccctgcagatcgagtgc
ctggcggcctgggaggactggctcctggtgggcaccaaaccgggccacctgctcctgtac
cgcatcaagaaggatgcaggtacaaacaggtttgaagtgacgttggagaaatctaacaag
aacttctcaaagaagatccagcagctgtttgtggtgtcacagtataagatcctggtcagt
cttcttgagaacaatatccatgtccacgacctcctgacctttcagcagattactgtggtg
tccaaagcaagaggagccacgctcttttcctgtgacctgcagcagtccagctccagcgag
gcccagctgaggatgtgtgttgcggtgaaaaagaagctgcagttgtactactggaaggat
cgggagtttcatgaactgcagggggactttgctgcaccagacattccaaagtccatggcc
tggtgtgagaactccatctgtgtgggattcaagcgggactattacttgattcgggtagat
gcacgtggctccatcaaggagttgttccccacaggcaagcagctggaacccctggtggca
cccttggctgatgggaaagtggcagtgggccaggatgacctcacagtagtgttgaacgaa
gatggggtttgcacacagaagtgtgccctcaactggacagacatccccattgcaatggaa
caccagcccccctacatcattgcggttctccctcggtatgtcgagatccgcacctttgag
cccaggcttctggtgcagagtgtggagctgcaacgaccacgcttcatcacctctgctgga
ccgaatatcgtctatgttgccagcaaccattttgtgtggcgccttgtgcctgtttccata
gcaacccagatccggcagctcctgcaggacaaacagtttgaactggccttgcagctggcg
aagatgaaggatgactcagatggtgacaaaaggcaacaaatccaccacattcagaacttg
tatgctttcaacctcttctgtcagaagcgatttgatgactcgatgcaggtgtttgccaag
ctgggcacagatccaacccatgtaattgggctgtatccggacctcctaccttcggattac
cgaaagcagctgcactaccccaacccgttgcccacgctgtctggtgcagaactagagaag
gcccatctggcacttattgactacctgacacagaagcgcagccaccttgtaaagcagctg
aatgattctgatccttccaccacatcccccctaatggagggcacccccaccatcaagagc
cgcaagaaactgctgcagatcattgatacgactctgctcaaatgttacctgcataccaac
gtggctcttgtttcacctctcttacgactagagaacaatcactgtcacattgaggagtgc
gagtatgtgctgaagaaggcccacaagtacagcgagctcatcattctctatgagaagaag
ggcttgcaccagaaagccttgcaggtactactggatcagtccacaaaggcaaattctcca
ctgaaaggtcacgagcgcacagtccagtacctccagagactgggatctgagaacttgggg
atcatttttgagttctctccttgggtgctgaaagcctgcccagaagatggcttgaagatc
ttcacagaggacctcactgaggtggagaccttgcccagggacaaggtgctgaacttcttg
aaggagggcttcaaggagcttgcagtgccatacctggaacacattatccatgtgtgggag
gacacaagccctgagttccataatgttctcatccaactctacctggagaaagtacaaggg
ttgatgaaggattatctttgctcactccctactggtgtgccccctgtagctgcagggaag
gaggagggtgatcttggggagttcagaaacaagctcttgaacttcctggaaatttcttcc
agttatgagccaacaaggctcatcagtgacttcccctttgatggtcttctggaggaacgt
gccctgctccttggtagaatgggaaaacatgagcaggccctgtttatctatgtgcacatt
ctgaaggacacccgcatggcagaagagtactgtcaccggcattatgatagagtgactgag
gggaacaaagatgtatatctgtcgttgctgcgcatgtacctgtcccccccagatgtgcgc
tgccttgtgcccatcatgatggatctgcctgaaccacaggccaacttgcaggctgctctc
cacgtcctggagctgcaccatagcaagctgaacacaaccaaggcaataaacttgcttcca
gcaaacacacagatccgtgagatccgtgtgttcctggagagcgtgttggaggaaaatgcc
caaaagaagcgcttcaaccaggtgctgaagagcttgttgcaggcagagttcctgcgggtt
caagaggagcggatcttccaccagcaggtaaaatgcatcatcacagaggagaaaacatgt
cgcgtatgcaagaagaagattggaaacagcgcctttgcccggtatcctaatggggtagtg
gtgcattacttctgttgcaaggaccgcaacacctgccccgctgaactgtga
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