Scleropages formosus (Asian bonytongue): 108919967
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Entry
108919967 CDS
T04919
Symbol
uimc1
Name
(RefSeq) BRCA1-A complex subunit RAP80 isoform X1
KO
K20775
BRCA1-A complex subunit RAP80
Organism
sfm
Scleropages formosus (Asian bonytongue)
Pathway
sfm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
108919967 (uimc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfm03400
]
108919967 (uimc1)
DNA repair and recombination proteins [BR:
sfm03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-A complex
108919967 (uimc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RAP80_UIM
Ribosom_S12_S23
Herpes_U47
B-block_TFIIIC
Motif
Other DBs
NCBI-GeneID:
108919967
NCBI-ProteinID:
XP_018583915
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Position
14:complement(14221196..14230689)
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AA seq
980 aa
AA seq
DB search
MPRKKRARPKGREEEDERDVPQKRRHDDDDDADDAEDQTVFIGDSEEEEEEKSRDRKPGM
LDRDYRAQGPEMTEEEMFNLAMKLSEEEAKNTAMQQQQEDEAIKIAIAESLHANGIQPDN
RVPKLVALTMGPGSVLSSDHESFPVPESSVFPARKKSLRFNQSKTLQCSSHRDSVTTVST
RKKKQPNSALTQRSELHLAGQAASSLSSAVSEKEKSFSQKKDPRSQSPHQDVQDASSCQS
QLEGNIFGPMRTSPPHRPIICIAKLSQDLVEDCQATGYILCSQKLSGCLESSQTPTLSQQ
DSPSPSESPTFPRMDLRKDHEVAKSESEGVSQEYLCLETIDDSESLLSRVKTLSLSRRQI
LKEQTPGGKNSSGQQVHAGFFQGGEEVHHRTNVHGHTGEEPFHPLTDENDEFCTQMELHW
SDDDDDDEEEGKALVKNTHRKLKTYLIRGQGSQSAGTGVSCSSDLDLPTSPVFPQDALQS
MGPQGTMPAKGVKSVQEAERKPTAVPSGRALTGTVYPPPVVDGHGSCAVRYYWGVPFCPR
GLDPDNYTRAILTQLEVYEKSLKEARRGLLRKAAWGDPVLPGPAEVPPCRRGRPKRFRAL
RQLPDEDEDDGEDEDEEENEDTTTSELVEVVEVQESTGSPQVSKISEQKMGETQDDDALR
VPSPLSKRENFPMVRKPDFSENLILLRKGYLRCRGSAVTETQEIRDEEEDLCPETELSDE
NTPELMVQSPEQSKVKAAEPECTDLLDEQQVGSGPAQEAGSEQTLQQQQEQEEHVDTGTE
EVHGNPEVMECPICMHAFPLEQIEMHAAYCDGSPEDLPLVEELSTQVRSQRRSSRRVEVL
DDNQPTSSSSGKTQKKERCYICRGTFPISEYERHVDDCLCHRTSAANKGAKNLLVALDQS
EQKGSAGPSDSRWRKRGNSSCSPVDGSEASEEAPTTAFQVRTSPIRAFTPISEITDCLID
FKNQYTAKPSQRRGRRKKFK
NT seq
2943 nt
NT seq
+upstream
nt +downstream
nt
atgccgcggaagaagcgagcccgtccgaaagggagagaagaagaggatgagagggatgtt
cctcagaagcgacggcatgatgatgatgatgatgctgatgatgcggaggatcagacggtg
ttcattggcgacagcgaagaggaggaagaagagaagtccagggacaggaagcctgggatg
ctggacagggactatagagcccagggaccagagatgacagaagaggagatgtttaacttg
gccatgaagctgagtgaagaggaggcaaaaaacaccgcaatgcagcaacagcaggaagac
gaagccataaagatagccattgctgaaagtctccacgcaaatgggattcaacctgacaac
cgcgttcccaagttggtcgccttgacaatgggcccagggtcagtgctgtcatctgatcat
gagtccttcccagtacctgagagctctgtgtttcctgccaggaagaagtcattgcgtttc
aaccaaagcaagactctccagtgttcttctcacagggacagtgtcactacggttagcact
cgtaaaaagaaacagccaaacagtgctctaactcagagatcagaattgcatctggctgga
caagcggcttcctctttgtcctcagcagtctctgagaaggagaagagtttttcccagaaa
aaagatcccaggtcacagtccccacatcaggatgttcaggatgcttccagctgtcagtca
cagttggaaggcaacatctttggccccatgaggacaagccctccccacagacctatcatc
tgcattgcaaagctgagtcaagacctagtggaagactgccaggccacagggtatatcttg
tgctctcagaagctatctgggtgcttggaaagctcacagacaccaacgttatcccagcag
gacagtcctagtccctcagagagtccgacattccccaggatggatttgagaaaggatcac
gaagtggccaagtctgaatcggaaggggtttcacaggaatatctgtgtctggagaccata
gatgactctgagtccctgttgtctcgcgtgaaaacgctgtctttgagtcggagacagata
ctcaaagagcagacacctggagggaaaaattcttctggccagcaggtccatgctggtttc
ttccaggggggcgaggaagttcatcaccgaacaaatgtacatggccatactggggaggag
ccatttcatccactgacagatgaaaatgacgaattctgcacccagatggagctgcactgg
tcggatgatgatgatgatgacgaagaggagggaaaagctctggtgaagaacacccatagg
aagttaaaaacatatttaatccgcggtcaggggtcccaaagcgctggcactggagtgagc
tgctcctcagatctggatctgcccaccagcccagttttcccccaggatgccctacaatcc
atggggccccaaggcactatgcctgccaagggagtcaagagtgtacaggaagccgagcgg
aagcccactgctgtgccctcaggcagagctctgactggcacagtctacccacccccagtt
gtagacgggcatgggagctgtgcggtacggtactactggggtgtgccgttctgccctcgt
ggcctggacccagacaactacacacgtgccatcctcacccagctggaggtgtatgagaaa
agcctgaaggaggcccgcaggggactcctccgcaaggccgcatggggagaccctgtgctc
cccggacctgcagaggtgcccccttgcaggaggggtcgtccaaaacgtttccgtgccctg
cggcagctaccggatgaggatgaggacgatggggaggatgaagatgaggaggaaaatgaa
gacacgacgacttcagagcttgtggaggttgtggaagtgcaggagagcacagggtctcca
caggtctccaagataagtgaacagaaaatgggagagacacaagacgacgatgccctgaga
gtgccatctccgctgtcaaaacgggagaatttcccaatggtgagaaagccagacttctca
gagaatctcatacttctaaggaaggggtacctcagatgcagaggttcagcagtaacagag
actcaagagattcgggatgaagaggaggacctttgtccagagacagagctgagtgacgaa
aacacaccggagctgatggtgcagagcccagaacagagcaaggtgaaagcagcagagcca
gagtgcacagacctcctggacgagcagcaggtggggagcgggccagctcaggaggctggc
agtgagcagacattgcagcagcagcaggagcaggaggagcatgtggacactggtaccgag
gaagtgcacggcaatccagaggtcatggagtgccccatctgcatgcatgccttccctttg
gagcagattgagatgcacgccgcctactgtgacgggtcccccgaagacctgcccctggtg
gaggagctcagcacccaggtcaggagtcagagaagaagcagtcgaagggtagaagtcctt
gatgataatcagcccacctcctcgtcttctggcaagacacagaagaaagagaggtgctac
atctgcaggggcacattccccatcagtgaatacgagcgacacgtggacgactgtctctgt
cacagaacatctgctgccaacaagggtgcaaaaaatctcttggttgccttggatcagtca
gaacagaaaggatctgctggaccatcggattcaagatggaggaaaagaggaaacagttcc
tgtagccctgttgacggatcagaggccagcgaggaggcaccaaccactgccttccaggtc
agaacttctcctatcagggccttcactccaatctccgagatcaccgactgcctcatcgac
ttcaagaaccaatacacagccaagccaagccaaagaagaggtcggaggaaaaagttcaaa
tga
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