Scleropages formosus (Asian bonytongue): 108920057
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Entry
108920057 CDS
T04919
Name
(RefSeq) collagen alpha-2(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
sfm
Scleropages formosus (Asian bonytongue)
Pathway
sfm04382
Cornified envelope formation
sfm04510
Focal adhesion
sfm04512
ECM-receptor interaction
sfm04518
Integrin signaling
sfm04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108920057
04518 Integrin signaling
108920057
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108920057
09142 Cell motility
04820 Cytoskeleton in muscle cells
108920057
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
108920057
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sfm04147
]
108920057
00536 Glycosaminoglycan binding proteins [BR:
sfm00536
]
108920057
Exosome [BR:
sfm04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
108920057
Glycosaminoglycan binding proteins [BR:
sfm00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108920057
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
108920057
NCBI-ProteinID:
XP_018584038
LinkDB
All DBs
Position
14:12259118..12301722
Genome browser
AA seq
1650 aa
AA seq
DB search
MQVRPWTKVHRLWFALLLLTIVTFSPSEVEAGGKKFSGVCGGRDCSGGCKCYPEKGARGQ
PGLTGPQGPRGLPGELGDIGLQGPKGQKGDQGPDGITGPKGAIGMTGVPGFSGADGIPGH
PGQAGPRGKPGADGYNGTQGDTGSPGPPGVPGYHGYPGGHGVKGQKGDTLELSVFMERFR
GDSGDPGLQGIIGPQGSPGLMGPRGVAGPQGPPGPPGPPGPKGLKIRILKGVKGERGDIG
EPGPIFQPSALSGPSGNKGEKGSKGETGDLVMTVHTNGRGEPGVMGFQGQRGDSGYPGIP
GDRGDAGDPGPQGKPGLKGEQGEAGEVLSLGGPVKVGPAGPAGELGPEGERGEQGEKGPR
GQPGLPAQATEQLVHLTGQFGPKGLKGAKGPDGDPGLPAMMPGPPGLDGLPGTQGPPGPT
GSWENEFRGPEGERGRPGFSGLKGHKGEPGLCQCDIVHSAAGPPGPAGNPGVRGMPGEWG
QKGDIGQPGLEGLTGVLGSSGPKGLPGLKGSKGKPRDAIEKGAPGDPGDPGEVGEPGERG
LSGPSGVSGSPGPQGPVGSGPVGSPGDKGLPGRPGPRGEVGPIGTPGSVLGIVKGEPGLP
GDPGFDGSSGTMGPPGVPGESNAVPGPPGEPGPVGMDGFPGLTGLKGFSGLPGEEGLKGE
RGEQGQEASAGPPGFVGSRGDKGQQGAKGSKGTIGPPGQPGQRGEVGLKGHHGEVTGIPA
AQPGEPGPPGSQGNQGFTGDPGKQGDPGRRGMPGVRGPKGEIGSAGLQGEEGEPGLPGRY
GFPGFSGQSGMPGPPGPPGEPGFSGDRGDGGDPGPPGPSIIKGERGERGDLGLNGSVGAQ
GDPGEAGLLGFRGISGLKGAKGSPGFSGFQGMIGLKGIQGFTGLQGETGSSGAPGEKGSI
GQPGEKGDRGLIGPPGKEPDIPRWVIVMMKGVKGDHGIPGEHGFTGPRGQKGFPGVPGGP
GLHGLPGSPSYEKGLPGSPGSPGLPGSKGMPGQTGAPGIEGFPGMPGPRGDKGTSGAFGP
TGDPGLDGPKGEEGAVVDLPGSTGLRGESGLPGLPGMKGLFGQPGDRGSPGFDGIQGPKG
VQGQPGLEGLTGPLGKQGYSGTQGPKGHPGTLGMPGEPGASGIPGQRGFPGLKGIFGLDG
LKGQKGIQGFTGLDNWGLPGETGSKGEKGEPGTHSTDVGLPGSLGFKGTEGDPGDQGESG
PPGNQGPPGPLGTIGQKGPVGSQGFPGPKGPKGSTGVQGIAGEYSQFGDKGERGLSGAFG
HRGVKGLQGDQGQLGPPGQMGPTGMKGIKGEPGLMGTPGRPGVQGERGLVGPKGNTGLPG
LPGEPGSRGVAPILEKQIGERGLPGVRGIRGPEGVRGESGPQGPPGEPGFIGPQGQKGIS
GVSGTPGKPGKRGDIGLTGHRGLQGVKGSPGRPGTPGIPGMPGRSISVGYLLVRHSQSED
TPMCPLGMAKLWEGYSLLYFEGQEKAHNQDLGLAGSCLLRFNTMPFLYCHPGEICHYASR
NDKSYWLSTLASIPMMPVEGVDIRPYVSRCSVCEAPSVAVAVHSQDSTIPKCPQGWRSLW
IGYSFLMHTASGEGGGQSLMSPGSCLEHFRTTPFIECSGARGTCHYFSSKQSFWLASIAQ
TFQSSSATKTLKAGQILSQISRCQVCMKNL
NT seq
4953 nt
NT seq
+upstream
nt +downstream
nt
atgcaggtgcgtccgtggaccaaagtgcatcgattgtggtttgcgcttctacttctgacc
atcgtcactttttccccgtctgaagtagaagcgggaggcaaaaagttcagtggagtctgt
ggaggaagagactgcagcggaggatgcaaatgttaccccgagaagggcgctcggggtcag
ccaggtcttactggtcctcagggacctcgtgggctcccaggtgaactgggtgacattggc
ctccaggggcccaaaggacagaagggggaccaggggccagatggcatcaccggacccaaa
ggagctattggaatgacaggtgttcctgggttttcaggagctgatggtattccaggccac
ccaggacaggcaggacctcgagggaaaccaggtgctgatggctacaatggaacacaagga
gacacggggtcaccaggaccaccaggagtgcctggctatcatggctacccgggtggtcat
ggtgtcaagggacagaaaggtgacactctggagctcagcgtgtttatggagcgatttcga
ggtgattcgggagatcctggactccaaggaattattggcccccagggcagcccaggttta
atgggccccaggggtgttgcaggaccgcaggggccccctggacctcccggccccccagga
ccaaaaggcctaaaaatcagaattctgaagggagtgaaaggagagaggggagacattggc
gagccaggcccaatcttccagccctcagctctctccgggccatctggcaataaaggtgaa
aaggggtcaaaaggtgaaactggagatttggtaatgactgttcatactaatggaagaggg
gagcctggggttatggggtttcaagggcaacgaggagactcgggctaccccggcatacca
ggagacaggggggatgcaggagatcctggaccacaaggaaaacctggactcaaaggtgaa
caaggagaggcaggagaagtattatcccttggaggtccagtaaaagtgggccctgctggt
cctgctggagagcttggtcccgaaggagagaggggagaacaaggagagaaaggtccacga
gggcaacctggacttccagctcaggccactgaacagcttgtgcaccttactgggcagttt
ggtccaaagggtcttaaaggggccaaaggtcctgatggtgaccctgggttacctgctatg
atgcctggtccccctggtttagatggattacctggaactcaaggcccaccaggccccacg
ggatcatgggaaaatgagtttagaggcccagaaggtgaaagaggaagaccaggcttttct
ggactgaaaggacacaaaggtgaaccagggctgtgccagtgtgacatcgttcactcagct
gcaggacccccaggccctgctggcaatccaggtgtccgtggaatgccaggggaatggggc
cagaaaggcgacataggccagcctgggctggaagggctcactggagtgctgggatcctca
ggcccaaaaggccttcctgggcttaaaggaagtaaagggaaaccaagagatgccattgaa
aaaggagcacctggagacccaggtgacccaggtgaagtgggtgagccaggagaaagaggt
ctgtcagggccaagtggagtctctggatcacctggaccacagggtcctgtgggttctggg
cctgtgggatccccaggagataaaggtcttccaggtcgtccgggtcctcgtggtgaagtc
ggccccataggtacaccaggttctgtattgggcattgtgaagggagagcctggccttcct
ggtgaccctggatttgacggatcttcaggcactatgggaccaccaggtgtccctggagag
tcaaatgcagtgcctggacctcctggtgaacctggacctgttggcatggatggtttccct
ggtttgacaggtctcaaagggttctctggattgcctggggaggaaggactcaaaggtgaa
agaggggaacaaggccaagaagcctctgctggaccaccagggtttgtgggatctcgggga
gacaaaggtcagcaaggtgccaaaggaagcaagggtacaataggtccaccaggccagcca
ggtcagcggggggaagttgggttgaagggccatcatggcgaagttactgggataccagct
gcacagcctggagaacctgggcctcctggttcccaagggaatcaaggttttacaggagac
cctggcaagcagggagacccagggaggagaggaatgccaggtgtccgtgggccaaaaggt
gaaataggttctgcgggcttgcaaggggaagaaggggaacccgggctaccaggcagatat
ggatttccagggttttctggacagtcaggcatgccaggccccccaggcccacctggtgaa
ccaggtttctctggagacagaggggatggtggcgacccaggaccaccagggccctcaata
attaaaggggaacgaggtgaacgtggtgacctgggcctaaacggaagtgtgggtgcacag
ggagatccaggagaggctggtctattaggctttcgtggaatatctggactaaaaggtgct
aaaggctcaccaggcttctcaggatttcaaggtatgattggccttaagggcatacaaggc
tttacaggactgcaaggggagactggatcttctggggctcctggcgagaaaggtagcata
ggccagcctggtgaaaaaggtgaccgaggtctaattgggcctcctggtaaggaaccagat
attccacgatgggtgattgtaatgatgaagggggtcaagggtgatcatgggataccaggg
gagcatggctttacaggacccaggggccaaaaaggcttccccggtgtgccaggaggcccg
ggacttcatggcctgcccggatcacccagctatgagaaaggccttcctgggagcccgggg
tcaccaggactgcccggaagcaaaggaatgccgggccaaacaggagcaccaggaattgag
ggatttcctgggatgcctggtcccaggggagacaagggcacatctggagcctttggtcct
acaggggatccaggcctggacggaccaaaaggtgaagaaggagctgtagtggacttgcct
ggctcaacaggattgaggggtgaaagtgggttacctggactgcctggcatgaaaggatta
ttcggccagcctggagacaggggcagccctggttttgatggcattcagggtccaaaaggg
gttcagggtcagcctggtctagaagggctaacagggccactgggaaagcagggatactca
gggactcagggccccaagggtcaccctgggactctaggaatgcccggagaacctggcgca
tcaggaattcctgggcagagaggctttcctggtttaaagggtatttttgggctggatggt
cttaaagggcaaaagggtattcaaggattcacaggtttggataactggggactgccaggt
gagacaggctctaaaggtgaaaaaggagagccagggacccacagtacagatgtaggattg
ccagggtctttgggcttcaagggcacagaaggagatccaggtgatcaaggtgaatctggg
ccccctggaaaccaggggcctccagggcctcttgggaccattggccaaaaaggtcctgtg
ggaagccaaggttttccgggtccaaaaggaccaaaaggttccactggggttcaaggtatc
gctggtgaatattcccaatttggtgataaaggagagagaggcttgtctggagcatttggg
cacaggggtgtaaaaggcctacagggagatcaaggacagctaggccccccaggacaaatg
ggaccaacagggatgaaaggaataaaaggagaaccagggctgatgggaactcctggaagg
cctggtgtccaaggagagagaggactggttgggcctaaggggaacacaggactacctggt
ttacctggagaacctggctctcggggtgtggcacccatcctagaaaaacagattggagag
aggggccttcctggggtccgtggaatcagaggtcctgaaggagtaaggggagaaagcggt
cctcagggaccacctggagagccaggatttataggcccacaggggcaaaagggaatctca
ggagtgagtggtacaccagggaaaccagggaagcgtggagacattggtctcactggacat
cgtggtctccagggcgtgaaaggaagtccaggacgccccggaacccctggtatcccgggc
atgccgggccgcagcatcagtgtgggctacctgctggtgaggcacagtcagtctgaggac
acacccatgtgccctttgggcatggccaaactgtgggaggggtacagcttgttgtacttt
gagggccaggaaaaagcccataaccaggatctgggtctggctggatcatgccttctgcgc
tttaacaccatgcccttcttgtattgccacccgggtgaaatttgccattacgccagccgg
aatgataaatcctactggctgtccacactggcctccattcccatgatgcctgtggaaggg
gtggatatcaggccctatgtcagccgctgctcagtgtgtgaggctccatccgtggccgtt
gccgtccacagccaggacagtaccattccaaagtgtccccagggctggagaagcctctgg
atcggatactccttcctcatgcacacagcatcaggcgaaggtggaggtcagtccctcatg
tcacccggttcctgcctggagcacttccgcacgacacccttcatcgagtgcagcggcgcc
aggggcacctgccactacttctccagcaagcagagtttctggctagcatccatcgcgcag
actttccagagctcgtcagccaccaagactctcaaagctggccagatcctgtctcagatc
agccgctgtcaggtgtgcatgaagaacctgtga
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integrated database retrieval system
