Scleropages formosus (Asian bonytongue): 108920555
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Entry
108920555 CDS
T04919
Symbol
hbs1l
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
sfm
Scleropages formosus (Asian bonytongue)
Pathway
sfm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108920555 (hbs1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfm03019
]
108920555 (hbs1l)
Messenger RNA biogenesis [BR:
sfm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
108920555 (hbs1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
DO-GTPase2
GTP_EFTU_D4
AAA_22
Motif
Other DBs
NCBI-GeneID:
108920555
NCBI-ProteinID:
XP_029108954
UniProt:
A0A8C9SWY3
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All DBs
Position
1:complement(50673842..50699062)
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AA seq
668 aa
AA seq
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MSRHRNVRGYNYDEDFDDDDVYGHSVDDDYCISPATAAQFIYSRHEKQVPCVEPLEEEDY
EAEEKTPTSPSMSHTLSSLDQGRLYSCLDQMRTVLGDSTPESVLVDAALKMDFDPQRALD
SVLSEDSRNKTVSCTQPEDPLPQRPERGKGREAPVSKLDVEVLPKVARMTVSGKKQTMGF
DIPNPEDSGVQSPAPGKVPTAEESPAAQCVAEECAPTPGRTPGKAKQQLNVKAELEKRQG
GKSLLNLVVIGHVDAGKSTLMGHLLYLLGDVNKRTMHKYEQEARKAGKASFAYAWVLDET
GEERDRGVTMDVGMTKFETPTKVITLMDAPGHRDFIPNMITGAAQADVALLVVDASRGEF
EAGFEAGGQTREHGLLVRSLGVTQLVVAVNKMDQVGWQQERFQEILSKLGHFLKQAGFKD
SDVSYIPTSGLSGENLSARSTVPELTAWYKGPCLLEQIDAFKPPQRSVEKAFRLCVSDVF
KDQGSGFCVTGKVEAGYVQIGDRVLAMPPNEVCTIKGIALHEEPIDWAAAGDHVSLTVTG
MDIIKINVGCVFCDPKEPIRSCSRFRARILLFNIELPVTQGFPVLLHYQTVSEPATIRKL
VSVLHKSSGEVIKKKPKCLSKGQNAIVEIQTQRPVALELYKDFKELGRFMLRYVGSTIAA
GVVTEIKE
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgacacagaaatgtccgcggctacaactacgacgaagacttcgacgacgacgac
gtgtacgggcactccgtggacgatgactactgtatctcaccggccacagccgcccagttc
atctactcgcgacacgagaagcaggtgccctgcgtggagccgcttgaggaggaggactac
gaggccgaggagaagacgcccacatcacccagcatgagccacacgctcagttcattggac
caggggaggctgtactcctgcctggaccagatgcgcacggtgctgggcgactccactccg
gagtcagtcttggtggatgccgccctcaagatggactttgacccacagcgtgccctggac
tcggtgctctccgaggacagcaggaacaagactgtgtcatgcacccagccggaggatccg
cttccccagaggcctgagagagggaaaggaagagaggctccagtgagtaagctggatgta
gaagtgctcccgaaagtggccaggatgaccgtctcgggcaagaagcagaccatgggcttc
gacatccccaacccagaagacagtggggtccagtcccccgcaccagggaaggtgcccacc
gccgaggagagccccgcagcccagtgcgtcgccgaagagtgcgcgccgacccctggcagg
actcctggcaaggccaagcagcagctcaacgtcaaagctgagctggagaaacgccagggg
ggcaaatcgctgctcaacctagttgtgattggtcacgtggacgccggcaagagcacgctg
atgggccaccttctctacctgctgggagacgtgaacaagagaacgatgcacaagtatgag
caggaggccaggaaggcgggaaaggcgtcgttcgcgtacgcctgggtcctcgacgagacg
ggcgaggagcgagacagaggcgtcaccatggatgtggggatgactaagtttgagaccccc
accaaggtgatcaccctcatggatgctccgggacacagggacttcatccccaacatgatc
acgggtgccgcgcaggctgacgtggctctgctggtggtggacgccagccgcggagagttc
gaggcggggttcgaggccggaggccagacgcgggaacatggcctgctagtgcggtcactc
ggggtcacccagctcgtggtcgccgtcaacaagatggaccaggtcggctggcagcaggag
cgcttccaggagatcctcagcaaactgggtcacttcctgaagcaggcgggcttcaaggac
tcggatgtgtcatacatccccaccagtggcctctccggtgagaacctgtctgcgaggagc
acggtgcctgagctcacggcttggtacaaaggaccctgtctcctggagcagatcgacgct
ttcaagcctccacagagatcggtggagaaggcgttccgcctctgtgtctccgatgtcttc
aaagaccagggttccggtttctgcgtgacggggaaggtggaggcgggctacgtgcagatc
ggggaccgcgtgctcgccatgcccccaaatgaggtgtgcaccattaaaggcatcgcgctg
cacgaggagcccatcgactgggcggctgccggcgaccacgtgagccttactgtgacgggc
atggacatcatcaaaatcaatgttggctgtgtcttctgcgatcccaaggaacccatcagg
tcctgctccaggtttcgggccagaatcctgctcttcaacatcgagctccctgtgactcag
ggcttccccgtgctgctgcactaccagactgtcagcgaaccagccaccatccggaaactg
gtcagtgttctgcacaaaagcagcggcgaggtgatcaagaagaagcccaaatgcctcagc
aaggggcagaatgccatcgtggagatacagacccagcgtcccgtagctctagaactctat
aaagactttaaggagctgggtcgcttcatgctgcgttacgttggctccacaatagctgct
ggagtagtgacagagatcaaggaatga
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