Scleropages formosus (Asian bonytongue): 108920615
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Entry
108920615 CDS
T04919
Symbol
ercc3
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB isoform X2
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
sfm
Scleropages formosus (Asian bonytongue)
Pathway
sfm03022
Basal transcription factors
sfm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
108920615 (ercc3)
09124 Replication and repair
03420 Nucleotide excision repair
108920615 (ercc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sfm03021
]
108920615 (ercc3)
03400 DNA repair and recombination proteins [BR:
sfm03400
]
108920615 (ercc3)
Enzymes [BR:
sfm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
108920615 (ercc3)
Transcription machinery [BR:
sfm03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
108920615 (ercc3)
DNA repair and recombination proteins [BR:
sfm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
108920615 (ercc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
AAA_34
AAA_22
Motif
Other DBs
NCBI-GeneID:
108920615
NCBI-ProteinID:
XP_018585018
UniProt:
A0A8C9RWH2
LinkDB
All DBs
Position
12:17434999..17442136
Genome browser
AA seq
783 aa
AA seq
DB search
MVKRDKSDRDKKKPKKRPHDDEEEEEEPLGNESQEAIPSAAGKQVDETSTKLDEYGAKDY
RLQMLLKNDHASRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPVHLHEYKLTAY
SLYAAVSVGLQTSDIIEYLQKLSKTSVPDGIVQFIKLCTVSYGKVKLVLKHNRYFVESTY
PDVIQRLLQDSVIRECRLRTTEGGDTELITEVISSKSAISKTTADGMGPSTSQVQNSQTS
SAEVPEDIFNYYEQLDKEEDEEEETQAVSFEIRQEMIEELQKRCIQLEYPLLAEYDFRND
TVNPDINMDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKR
CLVLGNSSVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGCSVAISTYSMLGHTTKRS
WEAERVMEWMRNQEWGLMILDEVHTIPARMFRRVLTIVQAHCKLGLTATLVREDDKIVDL
NFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNK
FRACQFLIRFHERRSDKIIVFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNP
KINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAYFY
SLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEEEDLMFSTKDEQQVLLQKVLAAS
DLDAEEEVVIGESSGRPQFSRRTGTMSSMSGADDTVYMEYQTARSSKTSLAKNIHPLFKR
FRK
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atggtgaaaagagacaaaagcgatcgggacaagaagaaaccgaaaaaacgcccccatgat
gatgaggaggaagaggaagagccattgggaaatgagtcccaggaggccattccttcagct
gctgggaagcaggtggatgaaaccagcactaagctggacgagtatggggccaaggactac
cgcttgcagatgctgctgaaaaatgaccatgcgtcccgtcctctctgggtggctccagat
ggtcacatcttcttggaggccttttcgccggtgtataagtatgcccaggactttctggtg
gccattgcagagcccgtctgccgacctgtgcatttacacgagtacaagctgactgcctac
tccctgtatgctgcagtcagtgtgggcctgcagacctcagatatcatagagtacctacag
aagctcagcaagacctctgtgcctgatggcatagtgcagttcatcaagctctgtactgtc
agttacggaaaggtgaagctggtgctgaagcataataggtactttgtggagagcacctat
cctgatgtgatccagcgcctcctacaggacagtgttatccgcgagtgtcgtcttcgtacc
acagaggggggtgacactgagctcattacagaggtcatctccagcaagtcagcgatctct
aagacaactgcagatggcatgggcccctctacctcccaggttcagaacagtcagacctcc
agtgcagaagtgcctgaggacatcttcaactactacgaacagttggacaaggaggaagat
gaagaggaagagactcaggctgtatcttttgagattagacaggagatgattgaggagctg
cagaaacgctgcatccagctggaatacccattgctggccgaatacgactttcgcaatgat
acagtgaaccctgacatcaacatggatctgaagcccaccgctgtgctgagaccctaccaa
gaaaaaagtctgcgcaagatgttcggcaatggaagagcacgatctggggtcatcgtgctg
ccctgtggtgcgggaaagtctttggtgggagtgacagctgcttgtactgtgcggaagcgc
tgcctggtcttggggaattcatctgtgtctgtggagcaatggaaggcccagttcaagatg
tggtccacaatcgatgacagccagatatgccggttcacatcggacgccaaggataagcct
ataggctgctctgtggccatcagcacctactccatgctgggccacaccaccaagcggtcc
tgggaggccgagcgtgtcatggagtggatgcgtaaccaagagtgggggcttatgattctg
gatgaggttcataccattcctgcgcggatgttccggcgggtgctgacaattgttcaagct
cactgcaaacttggactaacagccacattggtgcgagaagatgacaagatagtggaccta
aacttcctgattgggccaaagctctacgaggccaattggatggagctacagaacaacggc
tacattgccaaggtgcagtgtgcagaggtctggtgtccaatgtcacccgagttttatcgg
gaatatgtagccatcaagacgaagaaacgaatcttgctctacactatgaaccccaacaag
ttccgcgcttgccagttccttatccgcttccacgaacgtcgcagtgacaagattattgtc
tttgctgacaatgtctttgcactcaaggagtatgctattcgcttgaacaagccctacatc
tatggacctacctcccagggagaacgcatgcagattctgcagaacttcaaacataacccc
aaaatcaacacaatcttcatctccaaggtgggagacacatcttttgatcttccggaggca
aacgtcctgatccagatttcttctcatggtggatcaagaaggcaggaagcccaaagactg
ggcagggtgctgcgtgccaagaaaggtatggtagcagaggagtacaatgcatacttctac
tccctggtctctcaggacacgcaggagatggcttactctaccaagagacagagatttttg
gttgatcaaggttacagcttcaaggtgatcacaaaactggcaggcatggaggaggaggac
ctgatgttctccactaaggatgagcagcaagtactcttacagaaggtgttggcagcttcc
gacttggatgcagaggaagaggttgtgattggggaatctagcggaagaccacagttctcc
cgccgcacaggcaccatgagctccatgtctggagctgatgacactgtctacatggagtac
cagacagcgcgcagcagcaaaacctctctcgccaaaaacatccacccccttttcaaacgt
ttccggaaatag
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