Scleropages formosus (Asian bonytongue): 108921102
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Entry
108921102 CDS
T04919
Symbol
cdc40
Name
(RefSeq) pre-mRNA-processing factor 17
KO
K12816
pre-mRNA-processing factor 17
Organism
sfm
Scleropages formosus (Asian bonytongue)
Pathway
sfm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108921102 (cdc40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sfm03041
]
108921102 (cdc40)
Spliceosome [BR:
sfm03041
]
Complex C
Other components
Step II factors
108921102 (cdc40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
EIF3I
WDR55
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
ANAPC4_WD40
Beta-prop_WDR75_1st
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_TEP1_C
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_SPT8
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_NWD2_C
WD_LRWD1
Beta-prop_Vps41
Beta-prop_IFT140_1st
PQQ_2
Motif
Other DBs
NCBI-GeneID:
108921102
NCBI-ProteinID:
XP_018585916
UniProt:
A0A0P7UFD4
A0A8C9S1F6
LinkDB
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Position
1:49491324..49507091
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AA seq
580 aa
AA seq
DB search
MAATVGSLVSYGTGSDSDSDNEDRSSTSPEKTDPDAVAHLRPLSSGKKTSLAILNSAPEV
AVKEDVMTGSHLDPSVKEVTFNPTYETMFAPEFGPINPFKTQQMAAPRNMLSGYAEPAHV
NDFMFEQQRRTFSTFGYALDPSVDNSQASSSSYIGDVEEAEKKKGLTVFEAGAKKGEKRK
KVKGGDASEIDNFLGPWAKYVDEKEVAKPSEEEQKELDEITAKRQKKGKNEEEAPAEEKT
VLHVKDMYDYQGRSYLHVPQDVGINLRSTDAPQKCYLPKKQIHVWSGHTKGVSAIRLFPM
SGHLLLSCSMDCKIKLWEVYNERRCLRTFIGHSKAVRDICFNNSGTQFLSAAYDRYLKLW
DTETGQCISRFTNRKVPYCVKFNPDEDKQNLLVAGMSDKKIVQWDIRTGEVVQEYDRHLG
AVNTITFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKWLACQ
SMDNQILIFGAQNRFRLNKKKVFKGHMVAGYACQVDFSPDMSYVVSGDADGKLNVWDWKT
TKLFHRIKAHDKVCISALWHPHETSKVITCGWDGQIKLWD
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgacagttggctccctcgtttcgtatgggacgggttctgactcggattcggat
aatgaagatcggtctagcacgagtccagagaagacagatcccgacgctgtagctcatctt
cgtcctttgagttctggcaaaaaaacttcattagctatcctcaattcagccccggaggtc
gcagtgaaggaggatgtgatgactggctctcatcttgatccttcggtcaaggaggtcacc
ttcaaccctacatatgagacaatgttcgcccctgagtttggtccgatcaacccattcaaa
acacagcagatggcagcccctaggaacatgctgtcgggctacgcggagccggcacacgtc
aatgacttcatgtttgagcagcagaggaggaccttctcaaccttcggttatgctctcgat
ccctcggtggacaacagtcaagcgtcctccagcagctacattggagacgtggaggaggcg
gagaaaaagaaaggcctcactgtgtttgaagcgggtgccaagaagggagagaagaggaaa
aaggtaaaaggcggagatgcctccgaaattgataatttccttggaccatgggccaagtat
gtggacgagaaggaagtagccaaaccttcagaggaggagcagaaagagctggatgaaatc
accgccaaaaggcagaaaaaaggcaaaaacgaggaggaggcccctgcagaggagaaaact
gttctccacgtcaaagacatgtacgactaccagggcaggtcgtacctgcatgttcctcag
gacgtcggcatcaacctgcgttccacggatgctcctcaaaagtgctacctgcccaagaag
cagatccatgtgtggtctggccacaccaagggtgtcagtgccatccggctctttcctatg
tctggtcatctgctgctgtcctgttccatggactgtaagatcaagctgtgggaggtgtac
aatgaaagaaggtgcttacggacatttattggccatagtaaagcagtaagggacatctgc
ttcaacaactcaggcacccagttcctgagcgctgcctacgaccgctacctgaagctttgg
gacacggagaccggccagtgcatctcacgcttcaccaaccggaaggttccttattgtgtg
aagttcaaccctgatgaagacaagcagaaccttttggtggcagggatgtctgataagaaa
attgtccagtgggacatccgaacaggagaggtggtccaggaatatgaccggcatctgggc
gccgtcaacacgatcacatttgtggatgagaacagacgctttgtcagcacatcagatgat
aagagccttcgggtttgggagtgggacattcctgtagacttcaagtacattgcggagccc
agcatgcactccatgcccgcggtcacgctgtcacccaacggcaagtggctggcctgccag
tctatggacaaccagatcctcatcttcggggcgcagaatcgattccgcctcaacaagaag
aaagtcttcaagggacacatggtagctggctacgcctgtcaggtggacttctctccagac
atgagctacgtggtctcgggtgacgcagatggcaagctcaacgtctgggactggaagacc
acgaagctgttccatcgaatcaaggcgcacgacaaagtgtgcatcagtgccctatggcat
ccacacgagacatcgaaggtcatcacctgcggctgggatggccagatcaagttgtgggat
tag
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