Scleropages formosus (Asian bonytongue): 108921912
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Entry
108921912 CDS
T04919
Symbol
smarcb1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 isoform X1
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
sfm
Scleropages formosus (Asian bonytongue)
Pathway
sfm03082
ATP-dependent chromatin remodeling
sfm03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108921912 (smarcb1)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
108921912 (smarcb1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
sfm01009
]
108921912 (smarcb1)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sfm03021
]
108921912 (smarcb1)
03036 Chromosome and associated proteins [BR:
sfm03036
]
108921912 (smarcb1)
Protein phosphatases and associated proteins [BR:
sfm01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
108921912 (smarcb1)
Transcription machinery [BR:
sfm03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
108921912 (smarcb1)
SWI/SNF complex
108921912 (smarcb1)
Chromosome and associated proteins [BR:
sfm03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
108921912 (smarcb1)
PBAF complex
108921912 (smarcb1)
SWI/SNF complex
108921912 (smarcb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
108921912
NCBI-ProteinID:
XP_018587167
LinkDB
All DBs
Position
17:23376691..23383021
Genome browser
AA seq
377 aa
AA seq
DB search
MALSKTFGPKPLKFQLEEDGDFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLASVEERKKI
VASSHDHGYTTLATSVTLLKASEVEEIFEGNDEKYKAVSISTEPPAYLREQKAKRNSQWV
PTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENASQPEVLVPIRLD
MEIDGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLTFVPAIASAIRQQIESYPTDS
ILDDQTDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPETFALKLCSELGLGGEFVTTIA
YSIRGQLSWHQRTYAFRSDFSENPLPTVEIAIRNTGDADQWCPLLETLTDAEMEKKIRDQ
DRNTRRMRRLANTAPAW
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgagcaaaacatttggaccaaaaccgctaaaatttcagctggaggaggatggg
gacttttatatgatcgggtcggaggtgggaaactacttgcgcatgttccggggctccttg
tacaagaggtatccatcactttggcggaggctcgcttctgtggaggagaggaagaagata
gtggcctcatcgcacgatcatggttacacaactttagccaccagtgtgacactgctgaag
gcgtctgaagtggaggaaatctttgaggggaacgatgagaagtacaaggccgtgtccatc
agcacggagcccccagcctacctcagggaacagaaggccaagcggaacagccagtgggtt
cccaccctccccaacagttcacaccacctggacgcggttccctgctccaccaccatcaac
cgcaaccgcatgggtcgtgacaagaagaggaccttcccgctttgcttcgacgatcacgat
ccggctgtgatccacgagaatgccagtcagcccgaggtcctggtaccgatccggctagac
atggagatcgacgggcagaagctcagggacgcattcacgtggaacatgaacgagaagctc
atgaccccagaaatgtttgcggagatcctctgcgatgacctggacctgaacccactgacc
tttgtccccgccatcgcttcggccatccggcagcagattgagtcctaccccacagatagc
atcttggatgaccagaccgaccagagggtcatcattaagctcaacatccacgtggggaac
atctccctagtggaccagtttgaatgggacatgtcagagaaggagaactccccagagacc
ttcgccctgaaactgtgctcagagctgggcctgggaggcgagtttgtcaccaccatcgcg
tacagcatccgcggccaactcagctggcaccagaggacgtacgccttcaggtctgatttc
agtgagaaccccctgcccactgtggagatcgctatccgaaacacaggcgatgccgaccag
tggtgccccttgctggagacgctgacagacgcagagatggaaaagaagatcagggatcag
gacaggaataccagacgcatgcggcgactcgccaacacagctccagcctggtga
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