Scleropages formosus (Asian bonytongue): 108921999
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Entry
108921999 CDS
T04919
Name
(RefSeq) collagen alpha-3(V) chain
KO
K19719
collagen type II alpha
Organism
sfm
Scleropages formosus (Asian bonytongue)
Pathway
sfm04510
Focal adhesion
sfm04512
ECM-receptor interaction
sfm04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108921999
04518 Integrin signaling
108921999
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108921999
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sfm00536
]
108921999
Glycosaminoglycan binding proteins [BR:
sfm00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108921999
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
108921999
NCBI-ProteinID:
XP_029104339
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Position
23:14580281..14601101
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AA seq
781 aa
AA seq
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MADQQASVPMEDQTLEETAWPAMLLERKVKVGFLELMDYLDPRVHKVLLEILAALDSLDP
LVCLEKMDLTVFLELTVQRPGPPGEPGLDGFPGKPGPKGDEGPPGSRGLTGERGEAGHPG
EPGAIGPRGEKGTQGERGREGPTGPAGEKGDKGDVGPRGPPGIPGNVIPEPGATGKPGEK
GEKGDQGQPGEPGHRGSPGEQGLRGLPGYPGSKGDQGAKGDRGQNGEQGPPGLPGPQGPR
GLPGNVGVPGNAGPPGADGLKGEKGEQGSEGRPGPPGRPGEPGMAGIPGLPGKGKDGLPG
QQGPQGMQGLPGSRGPPGEATSGPPGVRGPPGNPGPQGPPGHNTALQDPQVHLASLAHKV
TRESQVPLGKVAKMGTRALLDLLVLLDLQEQMEQRVQMVHRGLQALRDPQEKRALQERQE
KMADLVSPGNRASKALGENLAHQDLRAIWDPKGRKVMQDHAENRENLVNLVHLEKREFLE
FLTLKLFIEKSMSGLMYLMGLKGPKGESGTPGLPGFPGSKGPSGPPGPVGPDGKTGVSGK
PGERGSKGERGDPGVKGDKGPPGEAGVPGTPGIPGRKGHTGMMGISGPPGDVGPAGSPGT
PGQPGMPGPRGESTSLEQMRRLIQEELTKQLDAKLAYLMAQIQPAHVKSSVGRPGPPGLP
GKDGLPGRTGSPGEPGMPGPAGGDGPRGPMGQKGERGAKGERGESGIGQRGEIGPPGPTG
PQGIPGYGKDGVPGTPGTQGEPGNPGPHGPAGPPGPPGQCDPSQCAYYASLASRPVNVKG
T
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atggctgaccagcaggcctctgtccccatggaggaccagacactggaagaaacggcatgg
ccagcgatgctgctggaaagaaaggtgaaagtgggcttcctggagttgatggactacctg
gacccccgggtccacaaggtcctcctggaaatcctggcagccctggactcactggacccc
ctggtttgcctggaaaagatggacttgacggtcttcctggagctgacggtgcaaaggcct
ggaccaccaggagagcctggcctcgatggtttcccagggaaacctggccctaagggtgac
gaaggtcctcctggttcaagaggcctaacaggtgagaggggagaagctggccacccagga
gagccaggagccatagggcccagaggagagaaggggacacagggagaaaggggcagggag
ggaccaactggtccagccggtgaaaaaggtgacaagggtgacgtcggaccccggggacct
cctgggatcccaggaaatgtaatcccagagcctggagcaacagggaagcccggagagaag
ggagagaaaggagaccaaggccagcctggggaacccggtcaccgtggatctcctggtgaa
caaggattgagaggtctaccaggatacccgggttcaaaaggagatcaaggtgctaaagga
gacagggggcagaatggagagcaaggcccaccgggtttgccaggtcctcagggtcctcgt
ggattgccagggaatgtgggggtcccaggaaatgctggtcctccaggagcagatggtctt
aagggggagaagggtgaacagggatcagagggccgtcctggacccccaggtcgcccagga
gagccaggcatggccggaattccaggactaccagggaaagggaaggacggactgcctggt
cagcaggggccacagggaatgcagggtcttcctggaagcagagggcctccaggagaggcc
accagcggaccgccgggagtgagaggtccgcctggaaacccgggcccccaggggccccca
ggacacaatactgccctgcaggacccccaggtccacctggcatccctggcccacaaggtg
acaagggagagccaggtccccctgggaaaagtggccaagatgggtaccagggccctgttg
gacctcctggtcctgctggacctccaggagcagatggaacaaagggtgcagatggtccac
cggggcctgcaggccctccgggacccccaggagaaaagggcattgcaggaaagacaggaa
aagatggcagacctggtgagcccggggaaccgggcttcaaaggccctaggggagaacctg
gcccaccaggatctaagggcaatatgggaccccaagggccgcaaggtcatgcaggaccac
gcggagaaccgggaaaacctggtgaacctggtccatctggaaaaacgggagttcctggaa
ttcctaacattaaagctatttattgaaaagtccatgtcaggattaatgtacctgatgggt
cttaagggacccaaaggagaatctggaactccaggactaccaggctttccaggttcaaaa
ggtccatctggacctcctggtccagtgggtcctgatggaaaaactggtgtgtcgggaaaa
ccaggtgaacgtggttccaagggagaaagaggagatccaggtgtaaagggagataaagga
ccacctggagaggccggtgttcctggaactcctggaatcccaggtagaaaagggcacaca
gggatgatgggaatatcagggcccccaggagatgtaggaccagcagggtctcctggaaca
ccaggacaaccagggatgccaggaccgcggggagagtcgacatccctagaacaaatgaga
aggctcatccaagaagaactaacaaagcagttagacgccaaactggcttacctcatggcc
cagatccagccagcccatgtgaagagcagcgttggacgcccaggaccccctggccttcct
ggcaaagatggacttccagggcgaactgggtcccccggggaacctggtatgccaggccct
gctggaggagatgggccaagaggcccaatgggtcagaaaggtgaaagaggtgctaaaggt
gaaagaggagaatccggtattggacagagaggagagattggtccacctggtcctacaggt
cctcagggtattcctgggtatggaaaagatggggtacctggcacaccaggcactcaggga
gagccaggaaatcctggcccccatggtccagcagggccaccaggaccccctggccagtgc
gacccctctcaatgtgcatactatgccagcctggcttcacgacctgtcaatgtcaagggg
acttag
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