Scleropages formosus (Asian bonytongue): 108922529
Help
Entry
108922529 CDS
T04919
Symbol
sdc1
Name
(RefSeq) syndecan-1 isoform X1
KO
K06257
syndecan 1
Organism
sfm
Scleropages formosus (Asian bonytongue)
Pathway
sfm04512
ECM-receptor interaction
sfm04514
Cell adhesion molecule (CAM) interaction
sfm04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108922529 (sdc1)
04514 Cell adhesion molecule (CAM) interaction
108922529 (sdc1)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
108922529 (sdc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sfm04131
]
108922529 (sdc1)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
sfm04090
]
108922529 (sdc1)
00535 Proteoglycans [BR:
sfm00535
]
108922529 (sdc1)
Membrane trafficking [BR:
sfm04131
]
Exocytosis
Calcium ion-dependent exocytosis
Acrosomal exocytosis proteins
108922529 (sdc1)
CD molecules [BR:
sfm04090
]
Proteins
108922529 (sdc1)
Proteoglycans [BR:
sfm00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
108922529 (sdc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Syndecan
Romo1
Motif
Other DBs
NCBI-GeneID:
108922529
NCBI-ProteinID:
XP_018588238
LinkDB
All DBs
Position
15:2202101..2212390
Genome browser
AA seq
322 aa
AA seq
DB search
MRVAAALLFCLSLWIPDAISQDLSPPEDQDASGDDLELSGSGSGDGVFVVPDTKVALKFN
ATTPSARQLETSPFSLTTVSNPISEIELEKLVTLAPPTTIGSTSTTHKAVAVPIDRETEP
QNTQLQVTSASPTTGGQGATPRGRKVMPKEGTSEPYATTTASAVVDVAMKETASAPEEKD
HPPAAPTLPPPATTMPSWAEPNPASSTPLLSDYGRINEDIVPGVATNVGSENDSDFALVE
DFSPEVQGTQEGVSENQSLLERKEVLAGVIAGGIVGLAFAVMLVSLMVYRMKKKDEGSYS
LDEQKHPNSGYQKPHKQEEFLA
NT seq
969 nt
NT seq
+upstream
nt +downstream
nt
atgcgagtcgccgcggcgctgctgttctgcctcagtttgtggattcctgacgcgatttcg
caggatctcagccctccagaggaccaggatgcatctggagatgacctggagctctctggt
tctggctctggcgatggcgtttttgttgtgcctgacactaaagtcgccctgaagttcaac
gcaacaactccttcagctcggcagttggaaacctctcccttttccctgacaacagtatcg
aaccccatttcagagatagagctggagaagttggttacattggctccacccaccacaata
ggcagcacctcaaccacccataaggctgtagcagtccctattgacagggagacggagcct
cagaatacgcagctgcaggttacttcggccagccctaccacaggagggcaaggagcgaca
cccaggggcaggaaggtcatgcccaaagagggtacctcggagccatacgccaccactacc
gcttcagctgtggtggatgttgccatgaaggaaactgcttcagcccctgaagaaaaggac
caccctcctgctgcacctacacttcctcccccagctacaaccatgccatcctgggctgag
cccaaccctgcctccagcacaccccttctctcagactacgggaggataaacgaggacatt
gtcccaggcgtggccaccaacgttggatcagagaatgactcggacttcgccctggttgaa
gacttcagccccgaggtgcaagggacccaggaaggtgtttcagagaaccagtccctgctg
gagcgcaaagaggtcctggctggtgtgatcgccggaggcattgtaggccttgccttcgcc
gtcatgctcgtgtccctcatggtctatcggatgaagaagaaggacgagggcagctactcg
ctcgatgaacagaagcacccgaacagcggctaccagaaacctcataaacaggaggagttc
ctggcataa
DBGET
integrated database retrieval system
