Scleropages formosus (Asian bonytongue): 108924245
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Entry
108924245 CDS
T04919
Name
(RefSeq) collagen alpha-1(XVIII) chain-like
KO
K06823
collagen type XVIII alpha
Organism
sfm
Scleropages formosus (Asian bonytongue)
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sfm04147
]
108924245
00535 Proteoglycans [BR:
sfm00535
]
108924245
00536 Glycosaminoglycan binding proteins [BR:
sfm00536
]
108924245
Exosome [BR:
sfm04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
108924245
Proteoglycans [BR:
sfm00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
108924245
Glycosaminoglycan binding proteins [BR:
sfm00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108924245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF959
DUF1554
Motif
Other DBs
NCBI-GeneID:
108924245
NCBI-ProteinID:
XP_018590995
UniProt:
A0A8C9WN11
LinkDB
All DBs
Position
21:6509458..6542490
Genome browser
AA seq
1582 aa
AA seq
DB search
MGHWLGLFFLLALSFGQVDTWLWSWSLPAKETPSVNRGKSGTSVPTEVTPDENVAGVGEE
IITVTSEIQKIVETWDRDPETEAPNLTTAAPTSSSNKAEHLMNNSRNGTSRLLEMRTKGD
VQENSTSIHQIRVSTSEKGRSPEEENGSGSRSSMGDTQEGMFISIITTEAVTNSNIKAGK
QMVKLEMAKEDLRTAGGNGTGLMDDNVVSLLQMIGDPPPDEITQVYSPDNSPGYVFGPDA
NTGQLARAHFRSPFFRHFSLLFHLQPTSPKAGVIFSITDPNQKVMYVAVKLSAVQGGKQK
VIFYYTEPDSDTSYEAASFSVSSLVNVWTRFSIAVFEDQVTFYMNCDGEPQVMRFERSPD
NMDLEAGTGLFVGQAGGADPDKFLGVIGDLKVVGDSRAAERYCEEEEDDSDAASGDYGSG
YEDSGQGEDRRRTVTAKPPSLRPIQQPPVTSKPFSTVAAERPAVEETRLESVESRPGAQG
PQGPTVSKGEKGDQGEKGTKGDRGPAGAKGDSGPNVGAGLGLQGVPHGEKGDPGEKGMKG
NAGFGYPGAKGDRGPPGPPGLPGPPGPPGSGTEVLKRGDGSVVQQVTGPRGPPGPAGPPG
PLGPPGADGEPGDPGEDGTAGPVGPPGFPGTSGEPGAKGEKGDPGEGQPGPRGPPGPPGP
PGSFRSDKQTFVDMEGSGLLDLESLRGLPGPPGPPGPPGPPGSVSTAGSSGATGPPGKDG
APGKQGPPGPSGKDGLPGLPGTKGEKGDPGELGLPGPLGEKGSQGAPGVSGRPGETGLAG
LPGPMGPVGPPGPPGPPGPGYRVGFDDMDMEGSGVGMFTGLTGVRGPEGIQGPPGIPGLP
GNPGLPGLPGEKGSEGPQGQDGKPGLKGFPGPQGPKGDRGDKGDRGEPGRDGASIPGPPG
PPGPPGQVIFKSSDSLDGIIGRQGLQGGAGIPGQPGFPGPAGPKGERGDPGHPGYGVKGE
KGEPGLIIGPDGSPFFQGSLKGEKGDRGPPGLVGPSGQYGPPGVKGEIGMPGRPGRPGVN
GYKGGKGEPGSGSGYGYPGPPGPPGPPGPPGSPVALDRFLRYDDVSRLYPATKGEKGDRG
APGIPGTPGVASNFDFYTLKNELKGERGETGTKGEKGEPGGGYYDPRYGGAQGPPGPPGI
PGLPGPKGDSIRGPPGPQGPPGSTGIGYDGRPGSPGPPGPPGPPGPPGSPSLPGAYRPTH
TINIPGPPGPPGPPGIPGLSSGVTVLRSYDTMISTARRQAEGTLIFIEDNGDLYIRVREG
FRQVTLGEYKPYARDLDNEVAAVKPPPVVHYSQDHSANSGAEHLSHIGTATRPIEPPPRH
PVEVSRTEPEQRNPVQPDSRYPPKTDPRYTSPPDHRYPSYPDSRYPPQPDNRYSPVQTDN
RYHNTPYRRPSVPEPQPAGHVHTFGPGLHLIALNAPQVGNMRGIRGADFLCFQQARAVGL
SGTFRAFLSSKLQDIYSIVRKSDRDSLPILNLKDQVLFSSWESLFRDSEGRMKENVPIYS
FDGRDVLRDSAWPEKMVWHGSSTRGHRQTDNYCETWRMGDQAVTGLASSLQTGQLLQQTT
SSCSRSYIVLCIENSYIAPSKK
NT seq
4749 nt
NT seq
+upstream
nt +downstream
nt
atgggacactggctgggcctattcttcctgctggcactttcttttgggcaagtggatact
tggctctggtcctggagcttgcctgccaaggagacaccgtctgtaaacaggggaaagtcc
ggaacatctgttcctacagaagtaacaccggatgagaatgttgctggggtaggagaagaa
atcataactgtgaccagtgagattcaaaagattgtggaaacatgggaccgggatccagaa
acggaagcacccaacctcactactgcagcaccaacttcatcttcaaataaggctgagcat
ctgatgaacaacagcagaaatggcacttccaggctgttggagatgagaaccaaaggagat
gtgcaagaaaacagcacatcaatacaccagattagagtatctacatctgaaaaagggaga
tctccagaggaggagaatgggtctggatctagatcctccatgggggatactcaagagggc
atgttcatctccatcattacaacagaggctgtgactaatagtaacataaaagctgggaaa
cagatggtgaagctggaaatggcaaaagaagacctaaggacagctggggggaatggtact
ggcctcatggatgataatgttgtgtccctcctgcaaatgattggagacccaccgccagat
gagatcacccaggtctacagcccggacaacagccctggctatgtgttcggcccggatgcc
aacacgggccaactggcacgtgcccacttccgcagcccctttttccgccacttttctctc
ctcttccacctgcagccaacatctcccaaggctggcgttatattctctattaccgatcca
aaccagaaggtcatgtatgttgctgtcaagctgtcagccgtgcaaggcggaaaacagaag
gtcatcttctactacacggagccagattcagacacctcctacgaagcagccagtttcagt
gtgtcttccttggtcaacgtctggactcgcttttccatcgctgtgtttgaggaccaggtc
actttttacatgaattgcgatggggagcctcaggtgatgcgctttgagcgttcacccgac
aacatggaccttgaggccggaacaggcttgttcgtgggccaggctggaggggcagaccca
gacaagtttctgggtgtcattggagacctgaaggtggtgggcgactcccgagcggctgag
cgctactgtgaggaggaagaagatgactcggacgcagcctctggagattacggaagtggc
tatgaagacagcggccagggagaggacagacgtcgcactgtaacggcaaagcctccatcg
ctacgtcccattcagcagcctcccgtgacctccaagcctttctccactgtggcagcagag
cgaccggcagttgaagaaactcgcttggagtctgtggagtccaggcccggagcgcaaggt
ccgcaagggcccactgtctccaaaggagagaagggggaccaaggggagaagggcactaaa
ggggacaggggtcctgcaggagcaaagggagattcagggccgaacgtgggcgccggcctt
gggttgcaaggtgtaccccacggagaaaagggtgaccctggagagaaaggaatgaaggga
aatgctggttttggatatcctggtgccaaaggtgaccgtgggccacccgggccacccggg
ctcccgggtccacctgggcccccgggttctggaactgaggttttgaagcgtggggacggc
tcggtggtgcagcaggtgacgggaccaaggggaccaccgggtcctgctgggccacccggc
cctcttggacccccgggagccgatggagaaccgggtgatcctggtgaagatggcactgca
ggtcctgttggacccccgggttttccaggcacctcaggagaacctggagccaaaggcgag
aagggtgaccctggagagggacaacctggccccaggggaccaccagggccccctggcccc
ccaggctcattccgatcagacaagcagacctttgtggacatggagggatccggtttacta
gatttggaaagtttacggggtttgccaggtcctcctggaccacctgggcctccaggtccc
ccagggtcagtcagcactgcagggtcgtctggagcaaccggacctccgggaaaggatggg
gcccctggcaaacagggaccccctggcccatcaggtaaagatgggcttccaggcctacct
ggaacaaaaggagaaaaaggtgatccaggtgagctgggtcttcctggaccactgggggag
aagggctctcagggtgcacctggggtatcaggtcgtccaggagaaactgggcttgctgga
cttcctggaccaatggggcctgttgggccacctgggccaccaggaccaccaggaccaggc
taccgtgttggctttgatgatatggacatggaaggttctggagtgggaatgttcacaggg
cttactggagtgagaggaccggaaggaatccagggtcctcctggaattccaggcctgcca
ggcaatccggggttgcctgggctgcctggtgagaagggaagtgaagggccccagggacag
gatggcaaaccaggactgaagggcttcccaggacctcagggaccaaagggtgatagagga
gacaaaggtgacagaggggaacctggtcgagatggagcgtcaattcctggacctccaggg
cctcctggccccccaggtcaggtcatcttcaagtcctcagactctttggatggaatcatt
ggaagacaaggacttcagggtggagctggtattcctggacaaccaggtttccctggccca
gctggaccaaagggtgaacgaggggatccaggtcatccaggctatggagttaagggcgag
aaaggagaaccagggctgatcattggacctgatggcagtcccttctttcagggaagtctg
aagggagagaagggagacaggggaccccctgggctagttggaccatctggtcagtatggt
cctcctggagttaagggtgaaattggaatgccaggccgaccaggtcgccctggtgtgaac
gggtacaaaggaggaaaaggggagccaggatctggatcaggatatggctatcctggtcct
cctggaccaccgggaccaccgggacctcctggatccccagtagcattggacaggttttta
cggtatgatgatgtctcaagactttatccagctacgaagggtgagaaaggtgatcgtgga
gctcctggcattcctgggacacctggtgttgcttcaaattttgacttctacacactaaag
aatgagctgaagggagagcggggagaaactggtaccaaaggggagaaaggagagccaggt
ggggggtactatgacccccgctatggaggagcacagggtccgcctggacctccaggaatc
ccagggctaccgggtccgaaaggagattctatcagaggtccccctggtccccaggggcca
ccaggatccacagggattggttatgatggtcgaccgggaagccctggccctccgggccct
ccgggcccccctggtcctccaggctcaccctcattgcctggggcatacagacctacacac
acaatcaatatccctggtccccctggtcctcctggtcctcctggaattcctggactgtct
tctggggtcactgttttgagatcatatgacaccatgatttccacggcaagacgacaggct
gagggcacactcattttcattgaagacaacggggacctctacattcgagttcgggaagga
ttccgtcaagtgacgcttggagagtacaaaccgtacgccagagatctggacaatgaagtg
gcagcagtcaagccacctccagtcgtgcattactcacaggaccactctgccaacagtggg
gcggagcacttgtcacacattggtaccgccacccggcctatagagcctccacctcgccac
cctgttgaagtctcaagaacggagccagagcaacgcaaccctgttcagcctgatagcaga
taccccccaaaaacagatcccagatacacctccccgcctgaccatagatatccctcctat
cctgactccagataccccccacaaccagacaacaggtacagtcctgtacaaacagacaat
aggtaccacaacactccctaccgcagacctagtgttccggaaccccagccagctggccat
gtgcacacatttggaccagggctgcacctgattgccttaaatgcgccacaagtgggaaac
atgcgtggcatccggggagcagacttcctgtgcttccaacaggcccgagcagttggactg
agcggtaccttccgtgcattcctgtcttccaagctgcaggatatctacagtattgtccgc
aagtctgacagagacagtctgcccatcttaaatctcaaggaccaggtgttgttcagcagc
tgggagtctctcttcagagactcagaggggaggatgaaggagaatgtacccatctactcc
tttgatgggagggatgtcctcagggatagtgcatggcctgaaaagatggtgtggcatggc
tcaagtaccaggggtcaccgtcagaccgacaactactgtgagacttggcggatgggagac
caggccgtgacaggcctggcgtcctctctgcagaccgggcagctcctgcagcagaccacc
agcagctgctccagatcttacatcgtgctgtgcatcgagaacagctacattgcaccgtcc
aaaaagtaa
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