Scleropages formosus (Asian bonytongue): 108924542
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Entry
108924542 CDS
T04919
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
sfm
Scleropages formosus (Asian bonytongue)
Pathway
sfm03030
DNA replication
sfm03410
Base excision repair
sfm03420
Nucleotide excision repair
sfm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
108924542 (rfc1)
03410 Base excision repair
108924542 (rfc1)
03420 Nucleotide excision repair
108924542 (rfc1)
03430 Mismatch repair
108924542 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sfm03032
]
108924542 (rfc1)
03400 DNA repair and recombination proteins [BR:
sfm03400
]
108924542 (rfc1)
DNA replication proteins [BR:
sfm03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
108924542 (rfc1)
DNA repair and recombination proteins [BR:
sfm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
108924542 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
AAA_7
AAA_30
AAA_5
BRCT_2
RuvB_N
AAA_33
AAA_16
Rad17
AAA_14
AAA_18
RNA_helicase
nSTAND3
AAA_17
AAA_19
NTPase_1
Motif
Other DBs
NCBI-GeneID:
108924542
NCBI-ProteinID:
XP_018591518
UniProt:
A0A8C9RU31
LinkDB
All DBs
Position
16:10032613..10043100
Genome browser
AA seq
1157 aa
AA seq
DB search
MDIRRFFAPSKPAAQKPPQNSITSKNEDVKKKPKSDSKVKSPKVEEKPSAKRKKRAVIDS
DSEEEKPNEKSRKVPKGSQKAHKTTTPPKKESIQYVSETDSDSDTFVSLKKPKSRENGVT
KAGGTRLTKGLQGSKEKQASAVGSPKKTSTSAGKVSTKSPSTSKETPPQPKLTPTSALDY
FGSQSIQRSEKKLVASTKRKDDPEDSLSDEAIARQLQMDEDMDLEKQLHEDEAFARTLAM
LDEEPLPKKARRDLLSSPSKMGAGQEQNSQTPPASSSQSRTNGKAGKSPSPKKKPSLVKA
SSKLAMMKRKEEKEGAKKREVTIKMVISPKKNPEAPTVSERVNTPKSGKVLTPKSETVTT
PVTSKISPKKLENASPEDSEKKRGNSLAYRNYLNREGPRALGSKEIPQGAENCLEGLTFV
LTGVLESMEREDAKSLIERYGGKVTGNISRKTSYLVLGRDGGASKTEKAESLGTKIIDED
GLLNLIRTKPGKKSKYEIAAEAEQSIPEHVRTRSTPQKMTPKKGTPTKKTPTKITSTQKT
PSSGKRGKSAASNSSTPPGRPFSSSRAGGNQEVKKGLSFDKGSEGDGGSLLWVDKYRPRS
LKGVIGQQGEQSCANKLLRWLQNWHRWHSRDKKPAAARFGKFAGKDDGSGFKAALLSGPP
GVGKTTTAVLVCEDLGYSYVEMNASCTRSKNSLKEVIAESLNNTSIKNFYTGASQTVSSK
HVLIMDEVDGMAGNEDRGGIQEMIGLIKQTKIPIICMCNDRNHQKIRSLANYCFDLRFQR
PRVEQIKGAMMSIAFKEGLKIPPPALNEIILASNQDIRQVLHNLSMWSAKDKVMTYDQAK
ADASNARKDFKLGPFDVCRKVFAAGEETARMSLIDKSDLFFHDYTLAPLFVQENYLHVRP
AAAGGNLKSHLTLLSKTADSICDGDLVDRRIRSSQTWSLLPTQAIYASVLPGELMRGYMS
QFPTFPSWLGKFSSTGKHSRIIQELATHMSLRIQSSKQAVNLDYLPYLRSALLEPLQRFG
AEGATQAVQLMDNYNLVKEDVDNIMEISTWAGQPEPYAKLDPKVKAAFTRAYNKESHLTP
YSLQTVKKTRRGTVDLGGGELDLESQELAEEEEEEEGGMATDAMIKQKKAKSRKDTKQEQ
AEDSGKGKGKGKGKGKK
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atggacatccggaggttctttgctcctagtaaaccggcagcacagaaacctccccagaac
agcatcacaagtaaaaatgaagacgtaaagaagaaacccaaatcagactcgaaggttaaa
agccctaaggtggaggagaagccatcagcgaaaaggaagaagcgagctgtcatagactcc
gactcagaggaggaaaagcctaatgagaagtctcggaaggttcccaaggggagccagaag
gcccacaaaactacaactcctccaaaaaaagaatcaattcaatatgtatcagagacagat
tcagacagtgacacatttgtgtccctgaaaaagcccaaatccagggaaaatggggtgacc
aaagcagggggcacaaggctgaccaaaggcctccagggaagcaaggagaagcaagcatcg
gccgttgggtccccaaagaaaacatccacatcagcagggaaggtctctacgaagtcaccc
tctacttccaaagagacccctcctcagcccaagctgacccccacatcggcactggactac
tttggcagccagagcatccagaggtcagaaaagaagttggtggccagcaccaagagaaaa
gatgacccggaggattcactgagtgatgaggccattgccagacagctgcagatggacgag
gacatggatctggagaaacagctgcatgaagatgaagcgtttgcaagaacgctggccatg
ttggatgaagaaccgctgcccaaaaaggctcgtagggacttgctcagctcacccagcaag
atgggagcaggccaggagcagaacagtcagactcccccagcctctagttcacagtctcgg
accaatgggaaggctggtaagagtccctctccaaagaagaaaccctcccttgtcaaggca
agctccaagctggccatgatgaagagaaaggaggagaaagagggtgcaaaaaagagagaa
gtgactatcaagatggtcatttcaccaaagaaaaacccagaagctccaacagtctcagag
agggtaaacacgcccaaatcgggaaaagtgttgacacctaaaagtgagactgtgaccaca
cctgtgaccagtaaaatctcccccaagaagttagagaacgctagtcctgaggactcggag
aagaagcgggggaattctctggcctatcgtaactacctaaacagggaaggcccccgagcc
ctgggttccaaagagatccctcagggggccgagaactgcttggagggtctgacctttgtg
ctcacgggcgtgctggagtctatggagagagaagatgccaagtcactgattgagcggtat
gggggcaaggttaccggaaacatcagcaggaaaaccagctacctggtacttggcagggat
ggtggtgcttccaaaacagagaaggccgaaagccttggcacaaaaatcatcgatgaggat
ggattgctcaatcttatacggacaaaaccaggcaagaagtcaaagtacgagattgcagcc
gaagcagagcagagtatacctgagcatgtgaggaccagaagcacccctcaaaagatgaca
cccaaaaagggaacgcccaccaagaagacgcccactaagattacctctacgcagaagacc
ccatcctctgggaaacgaggcaagagtgccgcatccaactcatctacacccccaggaagg
ccattttcaagcagcagagcaggaggcaaccaggaggtgaagaaaggcctgtcttttgac
aaggggtcggagggagacgggggcagtctgctgtgggtggacaagtaccgaccccgcagc
ctgaagggggtcatcgggcagcagggggagcagagctgcgctaataaactgctgcgatgg
ctgcagaactggcaccgctggcactccagggataagaagcctgctgcagcaagatttgga
aagtttgcgggtaaggatgatggctccgggttcaaggcggcactactctctggacctcca
ggggtgggaaagaccaccactgctgtccttgtgtgtgaggacctgggctacagttatgtg
gagatgaacgccagctgtactcgcagcaagaacagccttaaagaggtcattgctgagtct
ctcaacaacactagcatcaagaacttctacacaggcgcctctcagacagtcagcagcaaa
cacgtgctcatcatggacgaagtggacgggatggctggaaacgaggacaggggtggcatc
caggagatgatcggtctcatcaagcagacaaagattccaatcatctgcatgtgcaatgac
cgcaaccatcagaagatccgttccctggccaactactgctttgacctgcgcttccagaga
ccgcgtgttgagcaaatcaagggcgccatgatgtccattgcattcaaagaaggcttgaag
attcccccacctgctctcaatgaaatcatcttagcttccaaccaagacatccgacaggtg
ctgcacaaccttagtatgtggtcagcgaaggacaaagtcatgacatacgaccaggctaaa
gcagatgccagcaatgccaggaaggactttaaattgggtccatttgacgtatgtcggaag
gtcttcgctgctggagaagagacggcacgcatgtctttgattgacaagtcggacctgttc
ttccatgactacacgcttgcacccctgtttgtccaggagaactacctgcatgtgcgtcca
gctgcagcaggaggaaacctgaagagccacctgacgttattgagtaagacggcagacagc
atttgtgatggagatctggtggaccgacggatccgatccagccagacctggtccctgctt
cctacgcaggccatctatgccagcgtgctccctggggaattgatgaggggctacatgagc
cagttccccaccttccctagctggctgggcaagttctcctccacgggaaagcatagccgt
atcatccaggagctggcaacacacatgagcctgaggatccagagcagcaagcaggctgtc
aatctagactaccttccttacctgcgctccgccctactggagcccctgcagcgctttggg
gctgagggggccacccaggctgtgcagctgatggacaactacaaccttgtcaaggaggat
gtggacaacatcatggagatcagcacctgggctgggcagccagaaccttacgccaagctg
gaccccaaggtcaaggcggccttcactcgggcgtacaacaaggagtcccacctgacgccg
tactccctgcagacggtgaagaagacccgcaggggcaccgtggacctcggtggtggggaa
ctagatctggagtcacaggaactggcagaggaagaggaggaggaggagggaggcatggcc
accgacgccatgattaagcaaaagaaagcaaagtcaagaaaggacacaaagcaggagcaa
gcagaggattctgggaaaggaaaggggaaaggaaaggggaagggcaagaagtga
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