Scleropages formosus (Asian bonytongue): 108925448
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Entry
108925448 CDS
T04919
Symbol
pcdh1
Name
(RefSeq) protocadherin-1 isoform X1
KO
K16498
protocadherin delta 1
Organism
sfm
Scleropages formosus (Asian bonytongue)
Pathway
sfm03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
108925448 (pcdh1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
sfm01009
]
108925448 (pcdh1)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
sfm04515
]
108925448 (pcdh1)
Protein phosphatases and associated proteins [BR:
sfm01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
108925448 (pcdh1)
Cell adhesion molecules [BR:
sfm04515
]
Cadherins
Protocadherins
108925448 (pcdh1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
Fibulin_C
Syndecan
Motif
Other DBs
NCBI-GeneID:
108925448
NCBI-ProteinID:
XP_018592902
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All DBs
Position
13:12800190..12941312
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AA seq
1192 aa
AA seq
DB search
MDLQCVELLLWAFFLSLFSRVAGNVIYRVPEEQPPNTLIASLAADEGLPDSGHLYKLEVG
APYLRVDGKTGDIFTTEVPIDRENLKDCRNLFEGEPCILEFEVSITDLNQNQGPRLIEGK
IEVLDVNDNTPQFPSPILTLSIPENTHVGALFSIPVATDKDSGHNGVADYALPNGPDTPG
LFGLQVAEDQGEKLPQLIVMGSLDREQKDSYDLSIKVVDGGSPPRYSSALLRIIITDAND
NAPKFEKSIYEAELPENSPVGHSVLQVKANDSDMGPNGEIDYSLYQPNDAVQRLLRIDRS
TGIISVKGPVDREEISILKFYVMARDRGPNSKSSKVFVIITVKDQNDNAPTIEIRGIGLV
THQNGIANISEDMPIGTPVALVQVSDRDEGENAVVTCVVAGDVPFQLRPASEAPSDRKRK
YFLQTTTLLDYERVKDYRIEIVAVDSGNPALSSTNSLKVQVMDVNDNSPVFSPSLFEVDF
PEENQPGDKVLDVVATDADSGTNAELIYSIMDSSMKALFDINPNTGEVQMRTQLDREQRE
RYEFHVAAADKGVPSLRGTATVVVRVLDRNDNDPKFMLSSYSFSVLENMPPLSPVGMVTV
IDADKGENARVHLSVEPDNGKFVIQNGTGTILSSISFDREKESTYTFRLKAVDAGDPPRS
SYVGVTINVLDENDNAPYVTKPSNSTYKYLPLVTNPETQVEVVEAEDIDTGANSELTYSI
TGGNPHGLFRISPMSGEITLAKEFTQKHNGLHRLVVKVTDKGKPPRHTTALVHFYVNETM
NNVTLVESLVGHSLYTPLDTDIAGDPEYSRAAQRSNILYGSLAGIAVVILIIVVVMVIRY
RLQKEAKSGYQAGKKETKDLYAPKQGPKSNKSKKGKKGKAPKPAKPLEEDEEANRQKTLK
FNLINDGVNDSPRIHLPLNYPPGSPDLGRHYRSNSPLPSIQLQPQSPSASKKHQAVQDLP
ATNTFVGTGDNNSTGSDQYSDYSYKANPPKYSNKQLPHRRVTFSTANQAQDLQDPSQHSY
YDSGLEESETPSSKSSSGPRIGPLALPEDHYERTTPDGSIGEMEHPENDLRPLPDVAMTG
NCTRECTEFGHSDTCWMPGQPSPNRKSRGAPKLSTFVPYQEREVPERPGGGSPKLAEERA
AKVANIRFVPPYSAYSSASSQEPGPDCPLEEFPMGQAATTPSSQGSKREIYL
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atggacctgcagtgtgttgagctgctactgtgggccttttttctgagcctctttagccga
gtggctgggaacgtcatctaccgggtgcctgaggagcagcccccaaacactctgattgcc
agccttgctgctgacgagggtctcccggactctggtcacctgtacaagctggaggtaggc
gccccctacctgcgtgtggatggcaagaccggggacatcttcactacagaggtgcctatt
gacagggagaacctgaaggactgccgcaacctgtttgaaggagagccgtgcatcctggag
tttgaggtgtccatcacagacctgaaccaaaaccaaggcccacgactgattgaggggaag
atcgaggtcctggatgtgaatgacaacaccccgcaatttccctcaccaattcttactctc
tccatcccagagaacacccacgtaggcgccctcttctctattcccgtggccactgacaaa
gactcagggcacaatggtgtggccgattacgccttgcccaacggacccgacaccccgggg
ctgttcggcttgcaggtggctgaggatcagggcgagaaactaccacagctgatcgtcatg
ggcagcttggaccgtgagcaaaaagactcgtatgacctcagcatcaaagtggtggatggc
gggagccctccacgctatagcagtgccttgctccggatcatcatcactgatgccaatgat
aacgccccaaagtttgagaagtcaatttatgaggctgaattaccagagaacagccctgtc
ggacactctgtactccaggtgaaggccaatgactctgacatggggccaaatggagaaatt
gactacagcttgtaccaacctaacgatgcagtccaaagactactgagaatcgaccggtca
actggaatcatctctgtcaaaggccctgtggatcgggaggaaatcagcatcttgaagttc
tacgtgatggcacgggataggggaccaaattcaaaaagctctaaagtctttgtgattata
actgtaaaggatcagaatgacaatgctcccaccatagagatccgtggcattgggctggtg
acccaccagaatggcatcgccaacatttctgaagacatgcccattggaacgcccgtagca
ctggtccaggtatcggaccgtgacgaaggtgagaacgctgtggttacatgtgtggtggca
ggtgatgtgccattccagctgaggccagctagcgaggcgcccagtgaccgcaagaggaag
tactttctgcagacgactacacttctggactatgagcgcgtgaaggactatcggattgaa
attgtggcggtggactcgggaaacccggctctctctagcaccaactctctgaaagttcaa
gtgatggatgtgaacgacaactctcctgtcttttccccgtcgctgtttgaggtggacttc
ccagaagagaatcaacctggagacaaagtgttggatgtggtggccacggatgctgacagt
ggcacgaatgctgagctcatctacagcatcatggactcctctatgaaggcactctttgat
atcaaccctaacacgggtgaagttcagatgcggacacaactggaccgagagcagagagag
cgttacgagttccatgttgctgcagccgacaagggtgtccccagtctgcgagggacagct
actgttgtggtcagggtgttggatcgtaatgacaatgaccccaaattcatgctgagtagc
tacagcttctctgtcctggaaaatatgcctccactcagccctgtaggaatggtgacagtg
attgacgcagacaaaggggagaatgcacgggtgcacctttcggtggaaccagacaatggt
aagtttgtcattcagaatggcactggcaccatcctctccagcatctcttttgatagggag
aaggaaagcacctatacattccgactcaaagctgtggatgctggtgacccaccaaggtct
tcctacgttggagtgactatcaatgtcctggatgagaatgacaatgctccctacgtcaca
aaaccctccaattcaacctataagtacctccctcttgttacgaaccctgagacccaggtg
gaggtggtggaggcagaggacatagatacaggcgctaattctgaattgacgtacagcatc
actggtggcaatccacatggactatttcgcatctcacccatgagtggagagatcaccctg
gctaaggagttcacccagaagcacaatggcctccaccgactggtggtgaaagtcactgac
aagggcaagccacctcgccacaccactgctcttgtgcatttctatgtcaatgaaaccatg
aacaatgtcaccctggtagagtctctggtgggccacagcctttataccccactggacact
gatattgctggtgaccccgaatatagccgtgctgcccagcgcagtaacattctatatggc
agcttagctggcattgctgttgttatcctgatcattgttgtggtgatggtcattcggtac
cgcctgcaaaaggaagccaagagcggttaccaggcaggcaagaaggagactaaagacctg
tatgcacccaagcagggccccaagagcaacaagagcaagaagggaaagaagggaaaagcc
cccaagccagcaaaacctcttgaggaggatgaggaggccaaccgccagaagacactgaag
ttcaacctcattaatgatggggtcaatgacagcccccgaatccacctccctctgaactac
ccaccagggagcccggacctgggccgccactaccgttccaactcacctctgccttctatc
cagctgcagccccagtccccttcagcatctaagaagcaccaggctgttcaggacctgcct
gccaccaacaccttcgttggcacgggtgacaacaactcgacaggctccgaccagtattcg
gattacagctacaaggccaaccctccaaaatacagcaacaaacagctgccacatcgccgg
gtgacgttctccaccgctaatcaggcgcaggacctgcaggacccttcgcagcacagctac
tacgacagcggcctggaggagtcggagactcccagcagcaagtcctcctcggggcctcgc
atcgggcctttggcgctgcctgaggaccactacgagcggaccacaccggacggcagcatc
ggtgagatggagcatcccgagaacgatctcagacctctgccagatgtggccatgacgggg
aactgcactcgggagtgcactgaattcggccactccgacacctgctggatgccaggccag
ccatcgcccaaccgcaagtcccgtggcgcacccaagctctccacctttgtgccttaccag
gaacgggaggtgccagagcgcccggggggtgggagccccaagctggcggaagagcgtgcc
gccaaggtggccaacatccgcttcgtccccccctacagtgcctactccagcgccagcagc
caagagccaggcccagactgccctctggaggagttccccatgggtcaggctgctaccaca
ccctccagccagggctctaagagagagatctatctgtag
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