Scleropages formosus (Asian bonytongue): 108925717
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Entry
108925717 CDS
T04919
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15-like
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
sfm
Scleropages formosus (Asian bonytongue)
Pathway
sfm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108925717
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sfm03041
]
108925717
03009 Ribosome biogenesis [BR:
sfm03009
]
108925717
Enzymes [BR:
sfm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108925717
Spliceosome [BR:
sfm03041
]
Complex A
U2 snRNP components
U2 related factors
108925717
Complex B
108925717
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
108925717
Ribosome biogenesis [BR:
sfm03009
]
Eukaryotic type
90S particles
Helicases
108925717
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
SRP54
AAA_25
nSTAND3
Flavi_DEAD
AAA_29
AAA_30
Motif
Other DBs
NCBI-GeneID:
108925717
NCBI-ProteinID:
XP_018593394
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All DBs
Position
16:10565506..10587147
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AA seq
757 aa
AA seq
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MSKRHRLDLGDDYSSSKKRSSADGKERDRDRSDRLRDRDRDRDREKDAKVSGVLPSPMGP
GIGGGQLLKQPPVQQQMNPFTNLPHTPRYFEILKKRLQLPVWEYRERFNDILARRQSFVL
VGETGSGKTTQIPQWCVDMVRAQPGPKRGVACTQPRRVAAMSVAQRVADEMDVTLGQEVG
YSIRFEDCSSAKTLLKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILMGVLKE
VVRQRPDLKVIVMSATLDAGKFQVYFDNCPLLTIPGRTHPVEIFYTPEPERDYLEAAIRT
VIQIHMCEEEEGDVLLFLTGQEEIDEACKRIKREVDDLGPEVGDIKIIPLYSTLPPQQQQ
RIFEPPPPRRPNGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLV
TAISKASAQQRAGRAGRTRPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQLKKLG
IDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKMVIAS
CEFNCSNEILSITAMLSVPQCFVRPMEAKKAADESKMRFAHVDGDHLTLLNVYHAFKQNH
ESVQWCYDNFVNYRSLMSADNVRQQLSRIMDRFNLPRRSTEFTSRDYYINIRRALLTGFF
MQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDVKPEWL
VKIAPQYYDMSNFPQCEARRQLERIVTKLQSKEYSQY
NT seq
2274 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaaagacaccggttagacttaggagacgactactcgtccagtaaaaagaggtcc
tcggcggacgggaaagaacgagacagagaccgcagtgaccgtttgagagacagggaccgg
gaccgggaccgggagaaggatgcgaaggtgtcgggggtgttgccgagccccatgggtccc
ggcattggcgggggacagcttctcaagcagccccctgtccagcagcagatgaacccgttc
acgaacctgccgcacacgccgcgctacttcgagatcctgaagaagcggctgcagctgcct
gtgtgggagtaccgggagcgcttcaacgacatcctcgcgcgccgacagagcttcgtcctg
gtcggagagaccggctccggcaagaccacgcagatcccccagtggtgcgtcgatatggta
cgagcacagccgggacccaagaggggcgtggcctgcacccagcccaggagagtggcggcc
atgagcgtggcccagcgtgtggccgacgagatggatgtcacgctgggccaagaggtgggc
tactccatccgattcgaggactgcagtagtgccaagaccctcctcaagtacatgaccgac
ggcatgctgctcagagaggccatgaacgaccctctgctggagcgctacggggtgatcatc
ctggacgaggctcacgagcgcacgctggctacagacatcctcatgggggtcttgaaggag
gtggtgcgacagcgacccgacctcaaggtgattgttatgagcgccacgctggatgcgggg
aagttccaggtgtactttgataactgcccactcctcaccattcccggccgcacgcacccc
gtggagatcttctacaccccggagcccgagagggactacctggaggccgccatccgcact
gtcatccagatccacatgtgtgaggaggaggagggagacgtgctgctctttctcaccgga
caagaggagatcgacgaagcttgcaaaaggattaaacgggaggtagacgacctgggtccc
gaagttggcgacattaagatcattccgctgtactccacactgcccccccagcagcagcag
aggatctttgagcccccgccgcccaggaggcccaacggcgccatcggaaggaaggtcgtg
gtgtcgacaaacatcgcggagacttccctgacaatcgatggcgtggtgtttgtaattgat
cccggatttgccaagcaaaaggtgtacaacccgcgcattagggtggagtccctgctggtg
acggccatcagcaaggcgtcggcccaacagcgggcgggccgcgctggcaggacgcgccca
gggaagtgcttccgcctttacacagaaaaagcctacaaaaccgagatgcaggacaacacg
tatcctgagattctcaggtccaacctgggctctgttgtgctgcagctgaagaaactgggt
atcgatgacttggtgcactttgatttcatggaccctccagccccggagacccttatgcgt
gccctggaactgctgaactacctggcggctctgaacgacgacggcgacctcacggagctg
ggctccatgatggccgagttccccctggacccgcagctggccaagatggtgatcgccagc
tgcgagttcaactgctccaacgagatcctgtccatcaccgccatgttgtcagtcccgcag
tgtttcgttcgccccatggaggcaaagaaggcggccgacgagtccaagatgaggtttgct
cacgtagacggagaccacctcacgctactcaacgtgtatcatgccttcaaacagaaccac
gagtctgtgcagtggtgctacgataactttgtgaactaccgctcgctgatgtcagccgac
aacgttcggcagcagctctcgcggatcatggaccggttcaacctgccacggcggagcacg
gagttcaccagtcgagactactacatcaacatacggcgcgctctgctcaccggtttcttc
atgcaggtggcacacctggagcggactgggcattacctgaccgttaaggacaaccaggtt
gtccagcttcacccctcaactgtcctggaccacaaaccggagtgggtgttgtacaacgaa
tttgtgcttaccaccaagaactacatccgcacctgcaccgacgtcaagccggaatggctg
gtgaagatcgctccccagtactatgacatgagcaacttcccgcagtgcgaagccaggagg
caactggagcgaatcgtcaccaaactccaaagcaaggaatattcgcagtactga
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