Scleropages formosus (Asian bonytongue): 108926501
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Entry
108926501 CDS
T04919
Symbol
sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
sfm
Scleropages formosus (Asian bonytongue)
Pathway
sfm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108926501 (sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sfm03041
]
108926501 (sf3b1)
03036 Chromosome and associated proteins [BR:
sfm03036
]
108926501 (sf3b1)
Spliceosome [BR:
sfm03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
108926501 (sf3b1)
Complex B
108926501 (sf3b1)
Complex C
U2 SnRNP specific factors
108926501 (sf3b1)
Chromosome and associated proteins [BR:
sfm03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
108926501 (sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
Motif
Other DBs
NCBI-GeneID:
108926501
NCBI-ProteinID:
XP_018594735
UniProt:
A0A8C9SDL8
LinkDB
All DBs
Position
1:27551931..27565914
Genome browser
AA seq
1315 aa
AA seq
DB search
MAKIAKTHEDIEAQILEIQGMKAALREEGDQGVGLDSTGYYDQEIYGGSDSRFAGYVTSI
AANEQEDDDEDDSSTSLLGQKKPGYHAPVAILNAIPQSDEQYDPFAEHRPQKIADREDEY
KARRRQMIISPERLDPFADGGKTPDPKLQARTYMDVMREQHLTKEEKEIRQQLAEKAKAG
DLKAVNGAAASQPVPTKRKRRWDQTADQTPSSVASKKVSSWDQADGTAETPGHTPGHTPS
NSRWDETPGRPKGSETPGATPSTRMWEPTPSHTPAGAATPGRDTPGHATPGHGGATSSVR
KNRWDETPKTERETPGHGSGWAETPRTDRGDESVGETPTPGASKRKSRWDETPASQMGSS
TPLLTPGKTPIGTPAMNMATPTPGHLMSMTPEQLQAWRWEREIDERNRPLTDEELDAMFP
EGYKVLPPPAGYVPIRTPARKLTATPTPIGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKP
DDIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAG
PLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYA
RVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLK
AVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAI
AALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREV
MLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRN
YRQLVDTTVELANKVGAAEIICRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLE
EQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQ
QAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKM
TPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAH
KKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVL
PALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAS
AVVQHMSLGVYGFGCEDALNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQY
CLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPHIYNDEKNSYIRYELEYFL
NT seq
3948 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatagccaaaacacacgaagacattgaggctcagatcctggaaatccagggt
atgaaggctgccctgcgggaggaaggcgaccagggtgtgggtttggactcaacagggtac
tacgaccaggaaatctacggcggcagtgatagccgatttgctggatacgtcacctctatt
gctgcaaatgagcaagaagatgatgatgaggatgactcctccaccagtctgttgggacag
aagaaacctggatatcatgctccggtggctattcttaatgccatcccacaatctgatgaa
cagtatgaccccttcgctgagcaccggccccagaagattgcagaccgagaggatgagtac
aaagcccgacgtcgacagatgatcatctccccggagcgccttgacccatttgcagatgga
ggcaaaacaccagaccccaaacttcaggcacggacatacatggacgtcatgagagagcag
cacctcaccaaagaggagaaagagatccgccagcagctggcagagaaggccaaggcaggc
gacttgaaagctgtgaatggtgccgctgcatcccagcctgtccccaccaagcgcaagcgc
cgctgggaccaaacagctgaccagacgcctagcagtgtcgcctccaaaaaagtctccagc
tgggaccaggctgatggtacagcggagaccccaggccacacccctggccatactccttca
aacagtcgctgggatgagacacccggtcggcccaagggcagtgagaccccaggggccacc
cccagcacacggatgtgggaacccacacccagccacacacctgctggtgctgccacccca
ggaagggatacacctgggcatgccacacctggtcacggaggagccacctccagtgtacgc
aagaaccgctgggatgagaccccaaaaacagaaagagagacccctggccatggcagcgga
tgggctgaaactcctcgcactgatagaggagatgaatcagtgggtgagacccccactcct
ggcgccagcaaaaggaaatcccggtgggacgagactcctgccagtcagatggggtcatct
acacctcttctcacaccgggaaagacccccattggcactccagctatgaacatggccacc
cctactcctggtcacttgatgagtatgacacctgagcagcttcaggcctggcgttgggaa
agagagattgatgagaggaaccgaccactcactgacgaggagcttgatgcaatgtttcct
gagggatacaaggtgctaccaccccctgctggttacgtgcccatccgaactccagcccgc
aagctgactgccacccctacccccattggaggcatgactggctttcacatgcagacagag
gatcgcaccatgaaatctgtcaatgatcaaccctctgggaacctgcccttcctaaagcca
gatgacattcagtactttgacaagcttctggtggaggttgacgagtctacgctgagccct
gaggaacagaaagagcgcaagatcatgaagcttttacttaagatcaagaatggcacacca
cctatgaggaaggctgcacttcgtcagatcaccgacaaagcccgggagtttggggcaggg
cccctctttaaccagatcctgcccttgctcatgtcccccacactggaggaccaggaacgc
catctgttggtcaaggttattgatcgcatcctttacaaactggatgacttggttcgacct
tacgtccacaagatcttggtggttattgaacccctgttgattgatgaagactactatgcc
agagtggagggcagagagatcatctctaacctggctaaggcagcaggcctggctaccatg
atctccaccatgaggcctgatattgacaacatggatgaatatgtgagaaacacaacagcc
cgtgcttttgcagtggtggcctctgcgcttggtatcccctccctcttgcccttcctcaag
gctgtgtgcaagagcaagaagtcctggcaggcacgtcacacaggcatcaagatcgtgcag
cagattgccatcctcatgggctgtgccattttgcctcacctgcgcagcttggttgagatc
attgagcatggtctggtggatgagcagcagaaagtacgcaccatcagtgccctggccatt
gcagctctggctgaggcagcaacaccctatggtattgagtcctttgactcagtactcaaa
cccttgtggaagggcatccggcagcacagaggcaagggtttggctgccttcctgaaggcc
attgggtacctgatccccttaatggatgctgagtacgcaaactactacaccagggaggtg
atgctcatcctcatccgagagttccaatctcctgatgaggaaatgaagaagattgtgctc
aaggtggtaaagcaatgctgtggtacagatggtgtggaggccaactacatcaagacagaa
atcctgcctccttttttcaagcacttctggcaacacagaatggccttagacaggcgcaac
tatagacagttggtggacaccactgtggagctagccaacaaagtgggtgcagctgagatc
atctgtcgcattgtggatgacctgaaggatgaagcagagcagtacaggaaaatggtgatg
gagacaattgagaagatcatgggcaacctgggggctgctgacattgaccataagctggag
gagcagctcattgatggcatcctctatgccttccaggagcagacgactgaggactctgtg
atgttgaatggatttggcacagtggtcaatgcccttggcaagcgagtgaagccctatctg
ccacagatctgcggtactgtcctgtggcgtctaaacaacaaatcagccaaggtgcgtcaa
caggcagctgacctcatctctcgcactgctgttgtcatgaagacctgccaggaggagaag
ctaatgggccacttgggtgtggtgctctatgagtacctgggagaggagtaccctgaagtg
ctgggcagcatccttggtgccttgaaggccattgtcaatgtcattggtatgcacaagatg
accccacccatcaaggacctgctaccccgcctgacgccgatcctgaagaacaggcacgag
aaggtgcaggagaattgtatcgacttggtgggcagaattgctgacaggggtgccgagtat
gtgtcagccagggagtggatgaggatctgctttgaactcctggagctcctgaaagcccac
aagaaagccatccgcagagccaccgtcaacaccttcggctacatcgccaaggccattggc
ccccatgatgtgttggccactctgctgaacaacttgaaggtgcaagagaggcagaaccgc
gtttgtacaacggttgccatcgccattgtggccgagacatgctcgcccttcactgtgctg
ccagcactcatgaatgagtatcgtgtccctgagctcaatgttcagaatggtgtgctcaag
tctctctctttcctgtttgagtacattggtgagatgggaaaggattacatctatgctgtc
acaccgctgctggaggatgccctcatggacagggatctggtgcacagacagacggctagt
gctgtagtccagcacatgtcccttggtgtgtatggtttcggctgtgaggacgcccttaac
catctgctcaactatgtatggcccaatgtgtttgagacctcaccacatgtcatccaggct
gtgatgggggcgctagaggggttgcgggtggccattgggccatgccgtatgctgcagtac
tgcctacagggtctcttccacccagcacgaaaggtgcgggatgtgtactggaagatctac
aactccatctacattggctcccaggatgccctgattgcccactacccacacatctacaat
gacgagaaaaattcgtacatccgctacgagctggagtacttcctatag
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