Scleropages formosus (Asian bonytongue): 108926535
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Entry
108926535 CDS
T04919
Symbol
utp4
Name
(RefSeq) U3 small nucleolar RNA-associated protein 4 homolog
KO
K14548
U3 small nucleolar RNA-associated protein 4
Organism
sfm
Scleropages formosus (Asian bonytongue)
Pathway
sfm03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
108926535 (utp4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sfm03009
]
108926535 (utp4)
Ribosome biogenesis [BR:
sfm03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
108926535 (utp4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR5
WD40
WD40_Prp19
WDR55
ANAPC4_WD40
Beta-prop_EML
Beta-prop_RIG_2nd
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_HPS5
Beta-prop_SCAP
WD40_Gbeta
Beta-prop_WDR90_POC16_2nd
Beta-prop_Aladin
Beta-prop_WDR19_1st
Beta-prop_VPS8
Beta-prop_TEP1_2nd
EIF3I
Tricorn_2nd
Beta-prop_WDR75_1st
Ge1_WD40
DUF7165
Beta-prop_IFT140_1st
Beta-prop_ACSF4
Lactonase
Gmad1
Motif
Other DBs
NCBI-GeneID:
108926535
NCBI-ProteinID:
XP_018594780
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Position
7:17865384..17877012
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AA seq
684 aa
AA seq
DB search
MGEFKVHRVRFFGYMPSGIRCMSFNERAERLALGRLDGTLEIFNFKDSFYQEKVIPGNDS
RSVEAVCWVAERLFTAGLNGEITEYDLENLCPKYSLDAFGGPIWTVACNAQGTHLAVGCE
DGSIKLFEILPEKIRFERNLDRQKGRVLSLSWHESGTRIAAGMLDMIRIFDVQSGHATHR
MLVDRGVSGMRNHECVVWCVAFLSDLTVISTDSSGKVQVWNAAMGILSSTHLVSKSDVLS
LAVSKDESSFVVGTSEGTVVQFQFLANILGGDEKAWVRTKTFKPHTHDVRALAEIGTAVV
SGGLDTQLVVRPLLDKVDIMSYDNVLHKIHFPHRSLVSCAQKAGMLLFQFPAQLEVWRLG
ESEGRGKPGDTLFVKKNPEKLLQLKRKGEDHISCSAISPCGGWLAYSTVSSLRVYRLQCD
EHVSISKVPKLPKVLRSAHQLSFSDDSSKLFAASTHSMVHVISLSQSECKHLHTFKPKSG
STEPVHLLAASKDGKWLAAANRGCEIHIYNLHKLKPHCTVPIYGSCPTAMGIHPTSNNLL
MVHADRQIFEYSIVEKQYTDWSRRVQREGLHKLWLERDTPVTHVTFNPRNAAQFMLHDTY
MFCIIDQSLPLPDNKCQFYNQITLKSLSEQERLSHAHAFKMCTKYQHLLFLGLLDDESLV
VVQRPLTDIASQLPAPVRLKKFAT
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgggggagttcaaggtgcaccgcgtccgcttcttcggctacatgccctctgggatccga
tgcatgtcgttcaatgagcgggcagagagactggctctaggcaggctggatggcactctg
gagatattcaacttcaaggacagcttctaccaggaaaaggtgattccaggcaatgattcg
cggtctgttgaagcagtttgctgggttgcagagcgactctttactgctggcctcaatggg
gaaataacggagtacgatctggagaacctctgtccaaagtactctttggatgcatttggg
ggacccatatggacagtagcttgcaatgcccaggggacacatttagcggttggatgtgaa
gatggatccataaaattatttgaaatcctcccagagaagatccgattcgagagaaatctg
gacagacagaaagggcgtgttctctctctgtcatggcacgagtcgggcacgaggattgcg
gcagggatgctcgacatgatccgaatttttgacgttcagtcagggcatgcgacgcacagg
atgttggttgaccggggtgtgtcgggcatgcgcaaccacgagtgtgtggtgtggtgcgtg
gccttcctgtcagatctcactgttatcagcaccgattcatctgggaaagttcaggtgtgg
aatgcagccatgggaatcctcagcagtactcacctggtctccaaatcggacgtgctctcg
ctggctgtctcaaaggatgagagcagctttgtggtgggcacgtccgaaggcactgtggtg
cagttccagttcctggccaacattctcggtggtgatgagaaagcgtgggtcagaaccaag
acgtttaagcctcacacccacgacgtgcgtgcgctggctgagattggcacggccgtagtg
tcaggaggtttggacacacagttagtggtgcggcccctcttggacaaggtggacatcatg
tcctacgacaatgtgcttcacaagatccactttccccatcggagcttggtatcatgtgcc
caaaaggcaggaatgctgctgttccaattccctgcccagctggaagtgtggaggctggga
gagagcgaaggccgtggaaagcctggcgacactttgttcgtgaagaaaaatccagagaaa
cttctgcagctgaagagaaagggtgaagaccacatcagctgtagcgccatttctccctgt
ggggggtggttggcctactccaccgtttccagccttcgagtctaccggctgcagtgcgac
gaacacgttagcatctccaaggtacccaagctgccaaaggttctgcgctctgcccaccag
ctctccttctcagatgattcgtccaagctgttcgcagcctccacccactccatggttcac
gtgatttctctcagccagtcggagtgcaagcatctgcacacgttcaagcccaagtcaggg
tccacagagcctgttcacctgctggctgccagtaaagatgggaagtggctggctgcagct
aataggggctgtgagatccacatatacaacttgcacaaactgaagcctcactgcacggtg
ccaatatatggctcctgccccactgcaatgggaatccatcccacctccaataacctgctg
atggttcatgcagaccggcagatctttgagtacagcatagtggagaagcagtacacagac
tggagccgccgagtacagagggagggtctccacaagttgtggttggagagggacacgcct
gtcacccatgtgaccttcaaccctcgtaatgcagcccagttcatgctgcatgacacctac
atgttctgcatcattgaccaaagcttgccactccctgacaacaagtgtcagttctacaat
cagataaccctgaaaagcctgtcagaacaagaaagactcagccatgctcatgccttcaag
atgtgcacaaagtaccaacatctcctttttttgggcctgctggacgacgaatctctggtt
gtggtacagcgccccctcacggacattgcctcccagttgccggcaccagtaaggctgaag
aagttcgccacataa
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