Scleropages formosus (Asian bonytongue): 108927932
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Entry
108927932 CDS
T04919
Symbol
prpf40a
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A
KO
K12821
pre-mRNA-processing factor 40
Organism
sfm
Scleropages formosus (Asian bonytongue)
Pathway
sfm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108927932 (prpf40a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sfm03041
]
108927932 (prpf40a)
Spliceosome [BR:
sfm03041
]
Complex A
U1 snRNP components
U1 related factors
108927932 (prpf40a)
Complex B
108927932 (prpf40a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
DTW
Motif
Other DBs
NCBI-GeneID:
108927932
NCBI-ProteinID:
XP_018597103
UniProt:
A0A8C9SBP8
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Position
12:2023216..2044142
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AA seq
908 aa
AA seq
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MSSADGSNGPSQPAPFPGVPPAAMPPPFMGPPGMPPHFPPMGMPPNMAPMPPGMMPPMMP
PMGGPPMGQMPGMMPPMMPGMMMPPRMPAAAMQPTGPPGVSPVDTAASTTSGTLTTNPAI
AAAQPGMTASPKDDQPKKKSVWTEHKSVDGKTYYYNTETKQSTWEKPDDLKSPAEQLLSK
CPWKEYKSDTGKPYYYNSQTKESRWTKPKELEDLEVMINSEGNVTSEPAASTLATSTPQS
DTTAAVATAATVTTVAETEAVVVPTVVEEQTAPVVAVAAAAVSQVTEVSVDTPVSTAEAT
PMVETPVSNDVPKEEERPELVKKVYKWNTKEEAKQAFKELLKEKGVSSTASWEQAMKMII
NDPRYSALPKLSEKKQAFNAYKVQTEKEEKEEARIKYKESKETFQRFLENHEKMTSTTRY
KKAEQMFGELEVWTTVPERDRLEIYEDVLFYLAKKEKEQAKHLRKRNWEALKNILDNMAN
VTYRTTWSEAQQYLLDNPTFAEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKSLLRE
RRRQRKNREAFQKFLDELHDHGQLHSMSSWMEMYPTISSDIRFSNMLGQIGSTPLDLFKF
YVEDLKARYHDEKRIIKDILKDKGFNVEVNTGFEDFGSVISSDKRATTLDAGNIKLAFNS
LLEKAEAREREREKEEARKMKRKEAAFKSMLKQATPPLEPNSTWEGVRERFLKEPAFEDI
TLESERKRIFKDFIHVLEHECQHHHSKNKKHSKKSKKHHRKRSRSRSGSESEDDDYHSKK
KKRSPSKSPSERSSSGESERSSKKSKKHKKKGKKRRHKSGSPESEGERDRKGRERGRERE
REREKERDRERDKENDKSRGKPRSDPKPKSPKRKSAKEEGGWDTSGSELSEGELEKRRRT
LLEQLDAP
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcagcggatggcagtaatggcccaagccaacctgcacctttcccaggtgtccct
cctgcagcaatgcctccaccatttatgggacctcctggaatgccccctcatttcccccca
atggggatgcccccaaacatggctcccatgccccctggaatgatgccacccatgatgccc
ccgatgggagggccacctatgggacagatgccaggcatgatgccaccgatgatgccagga
atgatgatgccaccccgtatgccagctgcagcaatgcagccaacagggccgcctggtgta
agccctgtagacactgctgcttcaactacatctgggacattgacaaccaatcctgccatc
gctgccgctcagccaggcatgacggccagcccgaaggacgaccagcccaagaagaagtct
gtgtggactgaacacaagtcggttgatgggaagacttactactacaacacagaaaccaag
cagtccacttgggagaagccagatgacttgaagtctccagcagagcaactgttgtcaaag
tgtccctggaaagagtataaatcggacacaggaaagccttactattataactctcaaact
aaagagtcacgttggaccaaacccaaagaactggaggatttagaagttatgataaacagc
gaaggaaatgtgacatccgagcctgctgccagtacccttgcaacatcaactccccaatca
gacaccaccgctgccgtggcaaccgctgctaccgtgacaactgtagcagagacagaggca
gtagttgtgcccactgtagtagaggagcagacggccccggtggtggcagtggcagccgca
gcagtatcgcaggtgactgaggtcagcgttgacacccctgtcagcaccgcagaggccacg
cccatggttgagaccccagtcagcaatgatgtcccaaaggaggaggagaggccagagctt
gtaaagaaggtctacaagtggaacaccaaggaggaagccaagcaggctttcaaggagctt
ctgaaggaaaagggagtttcatctacggcatcctgggaacaagctatgaaaatgatcatt
aatgaccctcgctacagtgctctgcctaaactgagtgagaagaaacaggcattcaatgca
tacaaggtccagacagagaaagaggaaaaggaagaggccaggattaagtataaggagtca
aaggagacctttcagcgcttcctggaaaatcatgaaaagatgacatccacaactagatac
aagaaagcggagcaaatgtttggagagctggaggtttggacaactgttccagagcgtgat
cgactggagatctacgaggatgttctcttttacttggccaaaaaggagaaggaacaagca
aagcatttgaggaagcgtaactgggaagcactgaagaacattctggacaatatggctaat
gttacatatcggaccacgtggtctgaagcccagcaatatctactggacaatcccactttt
gctgaggatgaggaattgcaaaacatggataaggaggatgccctgatttgctttgaggag
cacatccgtgccctggagaaggaggaggaggaggagaagcaaaagtccctgctgcgagag
aggcggcgtcaacgcaagaatagagaggccttccagaaattcctggatgagctccatgac
catggacaactacactccatgtcctcctggatggagatgtacccaaccatcagctccgac
atccgcttctccaatatgcttggccagattggctctactccacttgatcttttcaaattc
tacgtggaggatctcaaggcacgctatcatgatgagaagagaatcatcaaggacatcctt
aaggacaaaggattcaatgtagaggtcaacacaggctttgaggactttggttctgtcatc
agctctgataaaagggcaacaactcttgacgctggaaacatcaagctggcttttaacagc
ttactggagaaagcagaggcacgggaaagagagcgggagaaggaggaggctaggaagatg
aagaggaaggaagcagccttcaagagcatgctaaaacaggctaccccaccacttgagccc
aactccacatgggagggtgttagagagagattcctgaaggaaccagcatttgaagacatc
actctagagtctgaaagaaagaggatattcaaagattttattcatgtcttagagcatgaa
tgtcaacatcatcactcaaagaacaagaaacattccaagaagtcaaaaaaacatcacagg
aagcgttcccgctctcgctcaggatcagagtctgaggatgatgactaccactcaaagaaa
aagaaacgttcaccttcaaagtctccctctgagagatcctccagtggtgaatctgagcga
agttccaagaaatcaaaaaagcataagaagaagggaaagaaaaggcgtcacaaatctggc
tccccagagtctgagggagagagagataggaaaggacgggaaagaggccgcgaacgagag
cgggagcgagagaaggaacgggacagggaaagggacaaggagaatgacaagtcccgtgga
aaacctcgatcagacccaaagcccaagtccccgaaaagaaaatcagccaaggaggagggg
ggctgggacacttcaggcagtgagctcagtgaaggagaactggagaagaggaggaggact
cttctggagcagcttgatgcaccttga
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