Scleropages formosus (Asian bonytongue): 108928083
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Entry
108928083 CDS
T04919
Symbol
vps8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X1
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
sfm
Scleropages formosus (Asian bonytongue)
Pathway
sfm04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
108928083 (vps8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sfm04131
]
108928083 (vps8)
Membrane trafficking [BR:
sfm04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
108928083 (vps8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
VPS8_N
zf_RING_Vps8
TPR_Vps41
TPR_VPS8_2
Beta-prop_WDR36-Utp21_1st
WD40_CDC20-Fz
zf-RING_Vps41
zf_RING_Vps8_fungal
zf-RING_11
Beta-prop_WDR5
Beta-prop_EML_2
ANAPC4_WD40
zf-RING_UBOX
EIF3I
Beta-prop_WDR3_1st
WDR55
zf-RING_2
zf-RING_5
zf-C3H2C3
Motif
Other DBs
NCBI-GeneID:
108928083
NCBI-ProteinID:
XP_029112699
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All DBs
Position
12:29355019..29369392
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AA seq
1404 aa
AA seq
DB search
MSESPDSRSLVSASSQLNLADVEAIDDKEFDIPQVDTPPTLESILNEPEDEDEAFVLEDT
CLLGAENIDAHSCETLSLGSSDSGDRSHHKRRRRPLEPAAAAAVHGSVLRHNVLKGISAQ
MASAADKVDAGLPTALTVSSVIAVGTSHGLALVFGKDTNQALRLCLGSVAEGVEYGAVSA
LSINHDCTRLLCGFAKGQITMWDLANGKLLRTITDAHPPGTAILHVKFTDDPTLAVCNDS
GGSVFELTFRRVMGLRSCDSRCLFSGSKGEVCCVEPLHASTQLRDHPITQHALLAMASLT
KILVIGLKPSLKVWMTFPYGKSDPASVPQLAWQFVVAHKMVNPMLAFCRGDTVHFLLVKK
DESGVIHVIKQRQLHLNCDLISLTWINSRTLLLLDSSERLHVLDRPSQEELETVDLSEVQ
LVYNSSHFKSLATGGNVSQALALVGEKACYQSVCCYSGQVVFLGTKSVHMMTLRNWRERV
EHLLKQEKFVEALSLAWSFHEGTAKAVVGLYGDPAKRKSVVADKMVEILLLYADRSLKKC
PEQGRIQVMEQHFQDMVPIMVDYCLLLHRTDLLFGQIYSRLVENSVAKGVFLESLEPYIL
SERIGCLTAPIMRDLLSHFQENGMMDSVENCLVHMDITSLDIQQVVQMCWEHQLYDAMIY
VFNSGMNDYISPMEKLFQVIGPPLREGRPLTDEQVVMGNKLLVYISCSLAGRAYPLGDIP
EDLVPLVKNQVFEFLIRLHTPEAPEEEEVYPYIHTLLHFDTREFLNVLALTFEDFKNDKQ
ALEYQQRIVDILLKVMVETSDFTPSQVGCLFTFLARQLAKPDNTLFVNRKLFDQVLEFLC
SPDDDSRHTERQQVLLELLQVGGVIQFDEGRLLSLAEKAEFYQICEFVYEKKHLYDKIFF
CYLKDPMRREEIFNYVHNMLSMPGYRPQERHSVREKALEHIQELVAIDPAKAADLMALHF
AQEVEPIVSKLGDDHLLFQFLERLLEFSEATRPQVSLRLGPGVHECHVDLLCRFSPQKVI
DFLKASKDYRLEEAVQITRQHALHAATAYLLERKGDVLGAFQVLLQMLQDQLAVLSEESE
GDPQKEGRLQRVEEVLQEVIALCHRSSQGLDQQQREALWFPLLEAMMSPQKLLRSTSSHH
ISTALKELTMQVLNSMSSFISLPAIVQRILQDPVYGKGKLAEIQGLILGMLETFTYEQTL
LETTTNLLNQDLHWSLSHLRSAVSRALHPRFDHCNICLQQYKRRQEGADEIVVFSCGHLY
HCQCLQSKCCTQLEWTLAWSCYKCTSSQGRRGAGPGRACDEEPGRGRSSSLAQMKVRSSP
HGAVEENSKKLHPDAELDAQQRQSWDQLRCMYRGPSRLTILAELSRSHGNEKAGQLHPAP
ARSTSIFHSENFQLRLSPPPLVEE
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atgtccgagtctcccgacagtcgcagtctggtgtccgcctcctcccagctgaacctggcc
gacgtggaggcgattgacgacaaagagtttgacattccgcaggtggacacgccgcccacc
ctagagagcatcctcaacgagccagaggacgaggatgaagccttcgtcctagaggacaca
tgtctgctgggcgccgagaacatcgacgcccactcctgtgagactctgtctctgggcagc
tcggacagcggcgatcgctcccaccacaagcggaggaggcgccctttggagcccgccgcc
gccgccgccgtccacggttccgtgctgcggcacaacgtcctcaaggggatctcggcccag
atggcgtccgctgccgacaaagtggacgcgggactgcctacggctttgacggtgtccagt
gtgatcgctgtgggaacgtctcacggactcgctctagtgttcggaaaagacacgaaccag
gcgctgaggctttgtctgggcagcgtggccgagggggtggagtacggtgccgtgtcggcc
ctcagcatcaaccacgactgcactcgtctgctctgcggctttgccaaaggacagatcacc
atgtgggacctggccaatggcaagctgctcaggaccatcacggatgcccacccccctgga
acagccattttacacgtgaagttcacggacgacccgacccttgcagtgtgtaacgacagc
gggggctccgtctttgagctgaccttcaggcgggtcatgggtctgcgcagctgcgactcg
cgctgcctcttcagtggctctaaaggtgaagtttgctgtgtggaacctctgcacgccagc
acccagcttcgagatcaccccattacccagcatgcactgctggccatggcctccctcact
aagattttagtcattggactgaaaccatccctaaaagtatggatgacctttccgtacggc
aagagtgacccagcgagtgtcccgcagcttgcctggcaatttgtagtggctcacaagatg
gtcaaccccatgctcgcattctgcagaggagacactgttcacttcctgctggtgaagaag
gatgagtcgggtgtcatacatgtcatcaaacagagacagctgcacctgaactgcgacctc
atcagcttgacctggatcaactcgcgcaccctgcttctgctggacagcagcgagcggctc
catgttctcgaccggcccagtcaggaggagctcgagaccgtggacttgtccgaagtgcag
ctcgtgtacaacagcagccacttcaagtctctggccaccgggggcaacgtgagtcaggca
ctggcgctggttggggagaaggcctgctaccagtcggtgtgctgttacagcggccaggtg
gtgtttttgggaacgaagtctgtgcacatgatgaccctgaggaactggcgagagagggtg
gagcacctgctgaagcaggagaagtttgtggaggcgctctcgctcgcctggtctttccac
gaaggaaccgccaaggccgtcgtggggttatatggtgatcctgccaagaggaagagtgtg
gttgctgacaagatggtggagattctcctcctgtacgccgatcgctctctgaagaagtgt
cctgagcagggcaggatccaggtgatggagcagcacttccaggacatggtgccgatcatg
gtggattactgtctgctgctgcaccggacggaccttctcttcggccaaatctacagtcgg
ctggtggagaactcggtggccaagggagtcttcctggagagcctcgaaccctacatcctg
agcgagcgcatcggctgcttgacggcgcccatcatgcgtgacctcctcagccatttccag
gagaacggcatgatggacagtgtggagaactgcctagtccacatggacatcacgagcctg
gacatccagcaggtggtgcagatgtgctgggagcaccagttgtacgacgccatgatctat
gtcttcaacagtggcatgaatgactacatcagccccatggagaaactcttccaagtgata
gggccccccctacgcgaggggagacctctgacagatgaacaagtggtcatgggaaacaag
ctgctcgtctacatcagctgctcgctggccggacgagcataccctctgggcgacattccg
gaagacttggttcctttggtgaaaaaccaggtgtttgagttcctcatccgcctgcacaca
ccagaggcccctgaggaggaggaggtttacccctacatacacacactgctgcactttgac
acacgcgagttccttaatgtcctcgctctgacatttgaggactttaaaaatgacaaacaa
gcactggagtaccagcagcgcatcgtggacattctgctcaaggtgatggtggagacctcg
gacttcaccccctcccaagtcggctgtcttttcaccttcctggcgaggcagctggccaag
ccggacaacacgctctttgtcaacaggaagctctttgaccaggtcttggagttcctctgc
agtcctgatgacgactccagacacacagaacgacagcaggtactgctggagctgctccag
gtggggggtgtcatccagtttgatgaggggcggctgctcagtctggcggagaaggcagag
ttctaccagatctgtgagtttgtgtatgagaagaagcacctgtatgataagatcttcttc
tgctacctgaaggaccccatgaggagggaggagatctttaactatgtgcacaacatgctg
tccatgccgggctacaggccacaggagcggcactcagtgagggaaaaggccctggagcac
atccaagagctggtggccatcgatccagccaaagcagctgacctgatggccttgcacttt
gcccaggaagtggagcccatcgttagcaagctaggggacgaccacctgctcttccaattc
ctggagcgtctcctggagttcagtgaggccactcgtccccaggtgtccctgcggctcggc
cccggggtccacgagtgccacgtggacctgctgtgtcgcttcagcccccagaaggtgatc
gacttcctgaaggcctccaaggactaccgtctggaggaggcagtgcagatcaccaggcag
cacgctcttcatgcggcaaccgcctacctgctggagaggaagggcgatgtcctgggggcg
ttccaggtgctgctgcagatgttgcaggaccagctggctgtgctgtcagaggagagtgaa
ggtgacccccagaaggagggccgcctgcagcgggtggaggaggtcctgcaggaagtcatc
gctctgtgccacagaagctctcagggccttgaccagcagcagagggaggcgctgtggttt
cccctcctcgaggccatgatgtcaccacagaaacttctcaggagcacatcttctcaccac
atctctacagctctcaaggagctcaccatgcaggtgcttaacagcatgagcagcttcatc
tccctgcctgccatcgtccagcgcatcctgcaggaccccgtgtacgggaagggcaagctg
gctgagatccaggggctcatccttggcatgttggagaccttcacttatgagcagaccctg
ctggagaccacgaccaacctgctgaaccaggacctgcactggtcgctctcgcacctgcgc
tctgcggtcagccgcgctctgcacccccgctttgaccactgcaacatctgtctacagcag
tacaagcggcggcaggagggtgccgacgagatcgtcgtcttcagttgcggtcacctctac
cactgccagtgtctgcagagcaagtgctgcacacagctcgagtggacgctcgcctggagc
tgctacaagtgcacgtcgagtcaggggaggcgtggcgccggcccaggacgggcgtgcgac
gaggagccgggccgggggcgcagctcttctctggcgcagatgaaggttcgatcatcacca
cacggtgcagtggaggagaacagcaagaagctgcaccctgatgcagagctggacgcccag
cagagacagtcttgggaccagctgcgctgcatgtaccgtggtccatccaggctcaccatc
ctggcagagctctcccgttcccatggcaacgagaaagctggccagcttcacccagcccca
gccaggtcgaccagcatctttcacagcgagaacttccagctgcggctgtcacccccacca
ctagtggaggaatag
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integrated database retrieval system
