Scleropages formosus (Asian bonytongue): 108928401
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Entry
108928401 CDS
T04919
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(II) chain
KO
K19719
collagen type II alpha
Organism
sfm
Scleropages formosus (Asian bonytongue)
Pathway
sfm04510
Focal adhesion
sfm04512
ECM-receptor interaction
sfm04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108928401
04518 Integrin signaling
108928401
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108928401
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sfm00536
]
108928401
Glycosaminoglycan binding proteins [BR:
sfm00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108928401
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
108928401
NCBI-ProteinID:
XP_018597819
LinkDB
All DBs
Position
22:13954098..13998187
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AA seq
1485 aa
AA seq
DB search
MFISVDSRTVLLLCLVAAARCQQEDDQAEGGCVQADRHYNDKDVWKXRACHIVCCDTGTI
LCDEXICEELKGCPNPEIPFGECCPICPAEQAPPSGQVGVKGQKGEPGDIIDIVGPRGPA
GPMGPPGEQGPRGERGEKGEKGSPGPRGRDGEPGTPGNPGPPGPPGPNGPPGLSGNFAAQ
MAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPTGAPGPQGFQGNPGEPGEPGTAGPIGPR
GPPGPPGKPGEDGEAGKPGKAGDRGPSGPQGARGFPGTPGLPGIKGHRGYPGLDGAKGES
GAAGAKGEAGSSGENGAPGPMGPRGLPGERGRPGPPGSAGARGNDGSPGPAGPPGPVGPA
GAPGFPGSPGAKGEAGPTGARGPEGAQGPRGESGTPGSPGPSGPSGNPGTDGIPGAKGSV
GAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGIPGFKGEAGPKGEQGPAGLQGPL
GPAGEEGKRGPRGEPGAAGPIGPPGERGAPGNRGFPGQDGVAGPKGAPGERGPQGVSGPK
GATGDPGRPGEPGLPGARGLTGRSGDSGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVM
GFPGPKGATGEPGKPGEKGLAGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGQPGPS
GFQGLPGPPGPPGEGGKPGDQGVPGEAGAAGATGPRGERGFPGERGSAGPQGLQGPRGLP
GTPGTDGPKGAIGPGGPPGAQGPPGLQGMPGERGPSGIPGPKGDRGDNGEKGPEGAPGKD
GSRGLTGPIGPPGPGGPNGEKGESGPAGPPGAPGTRGAPGDRGETGPPGPAGFAGPPGAD
GQPGAKGDQGEVGQKGDAGAPGPQGPSGAPGPQGPTGVSGPKGARGAQGPPGATGFPGAA
GRVGPPGPNGNPGPAGPAGPPGKDGPKGVRGDGGPPGRQGDPGLRGPAGTPGEKGEPGED
GPPGPDGPSGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGTAGDRGPPGPV
GPPGLTGPAGEPGREGNPGSDGPPGRDGATGIKGDRGNTGPAGAPGAPGAPGAPGPVGPT
GKQGDRGEAGAQGPAGPSGPAGARGMPGPQGPRGDKGEAGEAGERGQKGHRGFTGLQGLP
GPPGQAGDQGASGPAGPSGARGPPGPVGPAGKDGANGLPGPIGPPGPRGRSGETGPAGPP
GNPGPPGLPGPPGPGIDMSAFAGLSQPEKGPDPLRYMRADQASGNLRQHDADVDATLKSL
NNQIENIRSPDGSKKNPARTCRDLKLCHPDWKSGEYWIDPNQGCTIDAIKVFCNMETGET
CVYPSPASIPRKNWWSSKSKELKHVWFGETMNGGFHFSYGDDSLAPNTASIQMTFLRLLS
TEASQNLTYHCRNSVAYMDNASGNLKKALLLQGSNDVGIRAEGNSRFTYSVLEDGCTKHT
GQWGKTVFEYRSQKTSRLPIVDIAPMDIGGADQEFGVDIGAVCFL
NT seq
4458 nt
NT seq
+upstream
nt +downstream
nt
atgttcatctcggtggattccaggactgtactgctcctctgcctcgtggccgcggccaga
tgtcagcaggaggacgaccaggcggaagggggctgcgtgcaggctgaccggcactataac
gacaaggacgtgtggaagnncagagcctgtcacattgtgtgttgcgacactgggaccatc
ctgtgtgacgaanttatctgcgaggagctaaaaggctgcccaaaccccgagatcccattc
ggagagtgttgccccatctgcccggctgagcaggcccctcccagtggacaagttggtgtt
aagggacagaagggagaaccaggagatatcattgatattgtaggaccaagaggaccagca
ggccccatggggcccccaggagagcagggaccacgtggcgagcgaggggagaagggagag
aagggaagtcctggcccccgtggcagagatggcgagcctggtacccctgggaacccgggc
ccccctggccctcctgggccaaatggtccccctgggcttagcgggaatttcgcagctcag
atggctggtggctttgacgagaaggctggaggtgctcagatgggcgtgatgcaaggaccg
atgggccctatgggtccaagaggaccaccgggccccactggagcccctggtcctcaaggt
ttccaaggcaaccccggagagcctggagagcctggcactgcaggccccataggtccccgc
gggccgcctggacctccaggaaaacctggtgaggatggtgaagctggcaagcctgggaaa
gctggtgatcgtggaccctctgggcctcagggagctcgtggattcccaggaaccccaggt
ctgcctggaatcaaaggacacagaggttacccgggtcttgatggtgcaaaaggagaaagt
ggagctgcaggagctaagggtgaggcaggttcttctggtgagaacggcgcgcccggaccg
atgggcccccgtggtcttccgggtgagaggggccgacccggacctcccgggtctgctggt
gctcgtggaaacgatggctctccaggccccgctggcccccctgggcctgttggtccagct
ggtgctccaggcttccctggttccccaggtgccaagggtgaagctggtcccacgggtgct
cgtggacctgagggagcccagggaccccgcggcgaatccggaacgccaggatctcccgga
ccttctggtccttctggtaaccctggtaccgacggtatccctggagccaagggatctgtt
ggagctcctggtattgctggcgctcctggcttcccaggaccccgtggaccccctggacct
cagggagccacgggacctctagggcccaaagggcagtcgggtgaccctggtattccaggg
ttcaagggtgaagcaggtcccaaaggagagcaaggccccgctggacttcagggtcctctt
ggcccagcaggagaggagggcaagaggggacccagaggagagcctggtgctgcgggccca
attggacctcctggcgagagaggcgctcccggtaaccgtggtttcccaggtcaggatggt
gtggctggtcccaagggtgcccctggtgagcgtggacctcagggtgtgtctggacccaag
ggtgccacaggtgacccaggccgccctggagagcctggtctgcctggagcaaggggtctt
accggtcgctctggtgattctggtcctcaaggcaaagttggcccatcaggtgctcctggt
gaggatggccgccctggacctcctggtccccaaggagcacgcggtcaacctggtgtgatg
ggcttccctgggcccaagggagccaccggtgagcctggcaaaccaggggagaaaggactg
gctggtgctccaggtctcagaggtctgcctgggaaagatggtgagaccggtgctgccggc
ccccctggcccagctggacctgccggagagagaggagaacaaggtcagcctggaccctct
gggttccagggtcttcctggacctcctggcccccctggtgagggaggcaagcctggtgac
cagggtgttcctggagaggctggggctgctggtgcaactggacccagaggtgagcgtggt
ttccctggagagagaggaagcgctggacctcaaggcttacaggggcctcgcgggctgccc
ggaactcctggaactgatggaccgaagggagccattgggccaggcggccccccgggtgct
cagggacctcctggccttcagggcatgcctggcgaaagaggaccttctggtattcctgga
cctaagggtgacagaggtgacaacggtgagaaaggacctgagggcgcgcctggaaaagat
ggctccagagggttaaccggcccaattggtcctcctggtccaggtggtcccaacggtgag
aagggtgaatccggacctgctggtccccctggagctcctggtactcgcggtgcacctggt
gaccgtggtgagactggtccccctgggcctgctggctttgctggtcctcctggtgcagat
ggtcagcctggagctaagggagatcaaggtgaggttggacagaagggtgatgctggagca
cctggcccccagggaccttctggagccccagggccacagggtcccacaggtgtatctgga
cccaaaggtgcccgtggtgcacaaggaccccctggtgcaaccggattccctggtgcagca
ggcagagtcggaccccctggtcccaacggtaatcctggtcctgctggccctgctggtcct
cctggaaaagatggccccaagggtgtccgtggtgatggtggccccccaggtagacaggga
gaccctgggcttcgaggtcctgctggcacacctggagagaaaggagagcctggagaggat
ggaccccctggtccagatggtccctctggcccacagggtctggctggacagcgtggtatt
gttggtctgcctggacagcgtggtgagagaggtttccctggccttcctggtccctctggt
gaacctggcaagcaaggtgctccgggtacagcaggtgaccgtggaccccctgggcctgtg
ggaccccctggattgactggtcctgctggagagcctggaagagaaggcaaccctgggtct
gatgggcccccaggtagagatggtgccactggaatcaagggtgaccgaggtaacactggt
cctgctggtgctccaggagccccaggtgcacctggagccccaggtcccgtgggtcccact
ggcaagcagggagacagaggagaggctggagctcaaggacctgcaggaccatctgggccg
gctggggccagaggaatgcctgggcctcaagggccacgtggagataagggtgaggcaggc
gaagctggtgagaggggacagaagggacaccgcggtttcaccggtctgcagggtctgcct
ggacctcctggtcaagctggagaccagggtgcttctggacctgctggccccagtggagca
agaggtcccccaggccctgttggtcctgccggaaaagatggagccaacggtctgcctggt
cctattggaccccctggtccccgtggtcgttctggagaaactggtccagctggtcctcct
ggtaaccctggaccccctggtcttcctggtcctcctggccctggtatcgacatgtctgca
tttgcaggcttgtctcagcctgagaagggccctgatcccctcaggtacatgagggctgac
caggcctctggtaacctgcgtcaacatgatgccgatgtggacgctaccctcaagtccctc
aacaaccagattgagaacatccgcagcccagatgggtccaagaagaacccagcccgcacc
tgcagggacctcaagctctgccaccctgactggaagagcggtgaatactggattgatcct
aaccagggctgcaccattgatgccatcaaggtcttctgcaacatggagactggtgagaca
tgtgtctaccccagccctgccagcatcccacgcaagaactggtggtccagcaaaagcaag
gagctcaagcatgtttggtttggcgagacaatgaatggaggattccacttcagttatggc
gatgacagtcttgcacccaacactgccagcatccaaatgactttcctgcgcctgctgtcc
acggaagcctctcagaacctcacctaccactgccgcaatagcgtggcctacatggacaat
gccagcggcaacctgaagaaggctctgctgctgcagggttccaatgacgtagggatccgt
gctgagggcaacagccgcttcacgtacagcgtgctggaggatggctgcacgaaacacaca
gggcaatggggaaagacagtgttcgagtacagatcacagaagacatctcgtctgcccatc
gtggacattgcccccatggatataggtggagcagaccaggagtttggagttgacatcggt
gcagtctgcttcttgtaa
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