Scleropages formosus (Asian bonytongue): 108928769
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Entry
108928769 CDS
T04919
Symbol
ercc2
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
sfm
Scleropages formosus (Asian bonytongue)
Pathway
sfm03022
Basal transcription factors
sfm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
108928769 (ercc2)
09124 Replication and repair
03420 Nucleotide excision repair
108928769 (ercc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sfm03021
]
108928769 (ercc2)
03036 Chromosome and associated proteins [BR:
sfm03036
]
108928769 (ercc2)
03400 DNA repair and recombination proteins [BR:
sfm03400
]
108928769 (ercc2)
Enzymes [BR:
sfm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
108928769 (ercc2)
Transcription machinery [BR:
sfm03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
108928769 (ercc2)
Chromosome and associated proteins [BR:
sfm03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
108928769 (ercc2)
DNA repair and recombination proteins [BR:
sfm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
108928769 (ercc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HBB
DEAD_2
Helicase_C_2
ResIII
DEAD
AAA_11
UxuA
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
108928769
NCBI-ProteinID:
XP_018598396
UniProt:
A0A8C9R9F4
LinkDB
All DBs
Position
10:complement(18981541..18990263)
Genome browser
AA seq
760 aa
AA seq
DB search
MKLNIEGLLVYFPYDYIYPEQYSYMQELKRTLDAKGHGVLEMPSGTGKTISLLSLIVAYQ
RAYPLEVTKLIYCSRTVPEIEKVVEELRKLMEFYAKETGETNKLLALALSSRKNLCVHPE
VSSLRFGKEVDGKCHSLTASYIRAQRHSNPSQPICHFFEEFDALGRQVPIPPGIYNLDDL
KAFGRRKGWCPYYLARYSILHANIVVYSYHYLLDPKIADLVSKELAKKSVVVFDEAHNID
NVCIDSMSVNLTRRTLDRSQANVETLQNTIQRIKEIDAAKLKEEYRRLVEGLKEANVARE
TDIYLSNPVLPDEILQEAVPGSIRTAEHFVGFMKRLLEYLKSRLRIQHVVQESSPQFLKD
IYEKVCIDRKPLRFCAERLRSLLRTLEITDIADFSPITLISHFATLVSTYSKGFTIIIEP
FEDKTPTIANPVLHFSCMDPSIAIKPVFERFQSVIITSGTLSPLDIYPRILDFRPVTMSS
FTMTLARTCLCPLIVGRGNDQVAISSKFETREDFAVIRNYGNLLLELSGIVPDGIVAFFT
SYIYMENIVASWYEQGILENIQRNKLIFIETPDAAETSMALEKYQEACENGRGAILLSVA
RGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHA
AQCVGRAIRGKTDYGLMIFADKRYARADKRGKLPRWIQEHISDGSLNLTIDETVQLSKHF
LRQMAQPFRREDQLGLSLLTLDQLQSEETLQRIAQIAQQV
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgaagctcaacatcgaagggctgctcgtctatttcccctacgactacatctacccggag
cagtactcgtacatgcaggagctcaagaggaccctcgatgcgaagggccatggagttctg
gaaatgccctcagggacagggaagaccatctcactcctgtccctcatcgtggcctatcag
cgggcttaccccctagaagtgaccaagctgatatactgctcccggactgtgcctgagata
gagaaggttgtggaagaactgcgaaaactgatggagttctatgccaaggagactggtgaa
acaaacaaactccttgcattggctctttcctcccgcaaaaatctttgtgtgcatccagag
gttagctctctgcgctttggaaaggaggtggatggaaagtgccacagcctaacagcgtca
tatatccgtgcacagcgccatagcaatccaagccagccgatctgtcacttctttgaggaa
tttgatgccctgggtaggcaagttcctatcccccctggtatctacaacttggatgacttg
aaggcctttggtcggagaaaaggctggtgtccgtactacttggcaagatattctattctt
catgctaatatagtagtctatagttaccactacctcttggatccaaagattgctgatctt
gtgtccaaagagcttgccaagaaatcggttgtggtttttgatgaggcgcacaacattgat
aatgtttgcattgactccatgagcgtgaacctcacaagaagaacccttgaccgcagtcag
gccaatgttgaaacattgcagaacactattcagagaataaaggaaattgatgctgcgaaa
ctgaaagaagaatacagaagattagttgaagggctgaaggaagctaatgttgcccgggaa
acggatatatacctctctaatcctgtgttacctgatgaaattcttcaagaagctgtgcct
ggcagcatccgcacagcagagcattttgtgggcttcatgaagcgtttgctggaatacctc
aagtcccggctccggatccagcatgtggtgcaggagagctcgccccagtttctcaaagac
atctatgagaaagtctgcattgaccgcaagccacttcgattctgcgcagagaggctgcgc
tctttgttgcgtacccttgagatcaccgacattgcagacttctcgcccatcacgctcatc
tcacattttgccactctggtcagcacatatagtaaaggtttcactattatcattgagcct
tttgaagacaagacacccaccattgctaaccctgtgctgcatttcagctgtatggacccc
tctattgccatcaagccggtgtttgagcggttccaatcggtcatcatcacatcagggaca
ctgtccccgctggatatctacccccgcattcttgacttccgtccggttaccatgtcttcc
ttcaccatgacgctagcgcgcacctgtttgtgcccactgattgttggcagaggaaacgac
caggtggccatcagttccaagtttgagacacgggaagattttgctgtcatccgtaactat
ggtaacctgctgttggagttgtcgggcattgtgcctgatggcatcgttgctttcttcacc
agctacatctacatggagaatattgtggcctcctggtatgagcagggcatcttggagaac
atccagaggaacaaactcatttttattgagacgccagatgctgctgagaccagcatggca
ctggagaagtaccaggaggcctgtgagaatggacgtggggccatcctgctgtcagttgcc
cggggcaaggtgtcagagggaatcgattttgtgcatcattatggacgtgcagtgatcatg
tttggtgtgccttacgtttatacacagagccggatcctcaaggcacgtctggagtatctc
cgggaccagttccagatccgggagaatgactttctgacgtttgacgccatgcgccatgca
gcacagtgtgtgggtcgggccatccgaggcaagacagactacgggctgatgatctttgca
gacaaacgatatgcacgtgcagacaagagagggaagcttccccgttggatccaggagcac
atttctgatggcagcctgaacctcaccatcgatgagactgtacagttgtcaaaacacttc
ctccgtcagatggcccaaccatttagaagggaggaccagctgggcttgtctcttctcact
ctggatcagctgcagtccgaggagacgctgcagaggattgctcagattgcccaacaggtc
tga
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