Scleropages formosus (Asian bonytongue): 108929120
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Entry
108929120 CDS
T04919
Name
(RefSeq) protocadherin-20-like
KO
K16498
protocadherin delta 1
Organism
sfm
Scleropages formosus (Asian bonytongue)
Pathway
sfm03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
108929120
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
sfm01009
]
108929120
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
sfm04515
]
108929120
Protein phosphatases and associated proteins [BR:
sfm01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
108929120
Cell adhesion molecules [BR:
sfm04515
]
Cadherins
Protocadherins
108929120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
108929120
NCBI-ProteinID:
XP_018598982
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Position
12:19931789..19935372
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AA seq
889 aa
AA seq
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MCGIMCNNRRFNLRAKLWGLCILLLFISPFPCFSNFSQAKEIVYKIKEGLPKGKIIGAIG
ADLELDFSVDPPLLFNLALKKFSERYVSLNSTTGELYTSENEMDREALCPGLPDSQDCFL
ALDVFILPQQYFQLVKIRIIVEDINDNKPSFPVQEIHVSVPENAQVNSRFAVEQSAVDPD
AGIYGVQTYWLVNDYGVFTLDVEENDSGELTPFLIVTGPLDRETKSEYTTSIIAEDGGSP
PLLGTATLKIMIIDVNDNCPQFTESEINATVNGNSTVGTHIARVHAYDPDQGENAQITYV
YSERVPIGVKEMFSLDKVTGVIKLASKIDTNTSKFYKLSVLAKGPGCIPALATLTLHVIK
VVFGPPALMPRYIAHEDDGIVFLKESEPANSPVAFFTVKNTDRQQQIDCHLEGDGPFKLS
PYKQFKDEYLLETTNALDYEKNKEYELSVVVKNYQGVLIKMFVKIQVIDENDNAPIFEQS
LVNLFIEENNPPNMFLTKLHATDKDSKERGEVVYLLGSDAPSIFALDRVTGVLVASTSLD
REEKEKYSFTVRAVDRGTPRQETFATVTIMVLDQNDNSPRFINKDFTFFIPENFPGFGEI
GVLSVTDADSGKNGWVALSIVNGSDIFVIDTGRGVLRAKNPLDREQQGTYYLWIEAVDGG
EPSRSCVTMVTVLLLDVNDNPPTVLFPQSNQSYMLVLPNTLPGTSITEVYAIDKDTGMNA
VIVYSIIKRKGGEPGSFDIDPNTGNITLRKTLNYRGLYSLLVKVSDHGQPEPLYTMVMVN
FFVNETVSNESYIQSLLTKEADMEMESIMRRLIDQPSRNKDFPCQTVLIGLSTACLGLLL
TVITQAAYMCSKRVKKHRKRGKRSEAEIPLKINRDFQTADRGFSEMSNI
NT seq
2670 nt
NT seq
+upstream
nt +downstream
nt
atgtgtggaattatgtgtaataacagacgcttcaacctcagggcaaaattatggggattg
tgcattctcctgcttttcatcagcccttttccctgcttttcaaatttcagccaagcaaaa
gaaatcgtctataaaataaaagaaggattacccaaggggaaaataataggggccatcggt
gctgacctggaactggatttctctgttgatcccccgcttttattcaatctggccctaaag
aaattcagtgaacgctatgtgagtctaaacagcacgactggggaactgtatacttcagaa
aatgaaatggacagggaggctctttgcccaggcctcccggatagccaagattgcttcttg
gccctggatgtgttcattctgccccagcaatatttccagttggtgaagatcagaattatt
gtggaggacatcaatgacaacaagcccagcttccccgtgcaggagatccacgtgtctgtc
ccagaaaatgcgcaggtgaactccagatttgccgtggagcagtcagcagttgatcccgat
gcagggatttacggagttcagacctactggctagtgaacgactatggggtcttcaccctg
gacgtggaggagaatgacagcggtgagctgaccccgtttttgattgtaactggtcccctg
gaccgagagaccaagagtgagtacacgacaagcatcattgccgaggatgggggatctccg
cccctattaggcaccgccaccctgaaaataatgattatagatgtgaatgacaactgccct
cagtttacagaatcggagatcaatgccaccgtgaatggaaactctacagtaggcacacac
atagctcgtgttcatgcatatgatcctgaccagggtgaaaatgcccagataacatatgtt
tatagtgagagagtgccaataggtgtaaaggaaatgtttagtcttgacaaagtcactggt
gtcatcaagttggccagtaaaatagacacaaacaccagcaaattctacaagctttcagtt
cttgcaaagggaccaggttgcatacctgccctggctacactgacactgcatgtcatcaaa
gtggtctttggtccaccagctttgatgccgcggtacattgcccatgaagatgatggaatt
gtgtttctgaaggagtctgagccagctaactctccagttgcgtttttcactgtgaaaaat
actgataggcagcaacagattgactgtcatttggagggtgatggtcctttcaagttgtcc
ccctacaagcaatttaaagatgagtatctactagaaacaaccaatgctttggactatgag
aaaaataaggagtatgaactttctgtggtggtgaagaactaccaaggtgtgctgataaaa
atgtttgtcaaaatacaggtgattgatgagaatgacaatgcacccattttcgagcagtct
ttggtcaacctgtttattgaggaaaacaatcctccaaatatgttccttaccaaactgcat
gccactgataaagacagcaaggagaggggagaggttgtgtacctgctgggatctgatgct
ccgtctattttcgcactggatcgagtgacaggggttcttgtagcatcaacatcattagac
agggaggagaaggaaaaatacagctttacagtgagggctgtggaccgtggaaccccccgc
caggagacctttgccactgtcaccataatggtgttggaccaaaatgacaacagtccacga
ttcatcaacaaagacttcacattcttcatccctgagaacttcccgggatttggagagatt
ggagtgctttctgtgaccgatgctgattcaggaaagaatggctgggtggccctgtcgatt
gtgaatggaagtgacatttttgttattgacaccgggagaggggtcttgagagccaaaaac
cctctggacagagagcagcagggcacctactacctgtggattgaggcagtggatggtggg
gagccctcgcgctcctgtgtcaccatggtcactgttttgcttctggacgtcaacgacaac
cctcctacagttctattcccgcagtccaatcaatcctacatgctagtgctgcccaatact
ctccccgggacatctataactgaggtgtacgccattgacaaagacactggtatgaatgct
gtgatagtttacagcatcatcaaaaggaagggaggggaaccagggtcattcgatatcgat
cccaacacgggtaacattactttgcggaaaacgttaaactacaggggcctttacagcctg
ctggtcaaagtcagcgatcacggtcagcctgaaccactctacaccatggtcatggtcaat
ttctttgtcaatgaaacggtgagcaacgagagctacatacaaagtcttttgaccaaagaa
gccgacatggaaatggagagtattatgaggagacttatcgatcagccttcaagaaataag
gattttccttgtcagactgtcctgattggactttctactgcatgcctggggctgctactg
acagtgatcacacaagctgcctacatgtgcagtaaaagagtgaagaaacaccgaaagaga
gggaagagatcagaggccgaaattcccttaaagattaacagagactttcagacagcggac
agagggttttcggaaatgtctaatatatag
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