Scleropages formosus (Asian bonytongue): 108929861
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Entry
108929861 CDS
T04919
Symbol
prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
sfm
Scleropages formosus (Asian bonytongue)
Pathway
sfm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108929861 (prpf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sfm03041
]
108929861 (prpf4)
Spliceosome [BR:
sfm03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
108929861 (prpf4)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
EIF3I
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
Beta-prop_EML
PRP4
ANAPC4_WD40
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
NBCH_WD40
Beta-prop_DCAF4
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_RIG_2nd
Beta-prop_Vps41
Beta-prop_EIPR1
Beta-prop_IFT122_1st
Beta-prop_IFT140_1st
WD_LRWD1
WD40_like
Beta-prop_WDR11_1st
Beta-prop_WDR35_TULP_N
Motif
Other DBs
NCBI-GeneID:
108929861
NCBI-ProteinID:
XP_018600204
UniProt:
A0A0P7WRL1
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All DBs
Position
6:12893327..12899340
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AA seq
507 aa
AA seq
DB search
MSDEEEPPMVKKPRIFYGSLEEKERERLAQDGSATSMKDAVKAGIEAGNINISSGESMEL
EDRVSERQAEVLAEFERRKRARQITVSTDDAEVKASLRALGEPITLFGEGPAERRERLRN
ILSVVGPDALKKSKKEDEKAKRSQEEYQQTWYHEGPALLKDARLWLARYSLPRAVKRLDN
ARVYKEIPESTRTVRQQELHKTLRNLNNFCSQIGDDRPISYCQFSPNSKLLVTASWSGLC
KLWAVPDCSLIRTLRGHNTNVGAISFHPQATLSLEESDVNLASCAADGSVKLWSLESDEP
VADIEGHSMRVARVAWHPSGRFLGTTCYDHSWRLWDLEAQEEILHQEGHSKGVHDLHFHP
DGSLAGTGGLDAFGRVWDLRTGRCVMFLEGHLKEIYGINFSPNGYHVATGSGDNTCKVWD
LRQRKCIYTIPAHQNLLSSVKFQPTDGHYLLTGAYDNTAKVWTHPGWSPLKTLAGHEGKV
MGLDISADGLLIATCSYDRTFKLWISE
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacgaagaggagccccccatggtgaagaagccccggattttctatggcagcctg
gaggagaaggagcgtgagcgactggcccaggatggaagcgctacctccatgaaggatgcg
gtgaaggcgggcatcgaggccggcaacatcaacatctccagtggggaatcgatggagctg
gaggatagagtgagtgaacgacaggcagaggtgctggcagagtttgagcgcaggaagagg
gcgcgtcagattaccgtgtccactgatgatgcggaggtgaaagcctccctgcgggctctt
ggagagccgatcactctgtttggggagggacccgctgagaggcgggagaggctacggaac
atcctgtcggtggtgggcccagatgctttgaaaaagtccaaaaaagaggatgagaaggct
aaacgctcccaggaagaataccaacagacttggtaccacgagggtccagccttgctcaaa
gatgcccgtctgtggttagcccgctactccctgcctagggctgtgaagaggttagacaat
gcgcgagtttacaaggaaatcccagaatccacacgcacagtacgacagcaggagctgcac
aagacgctgaggaatctgaataacttctgcagccagattggagatgaccggccaatatca
tactgccaattcagccccaactctaaactgctggtaaccgcatcctggagcggtttatgt
aaactgtgggcagtccccgactgcagcctcatccgcactttgaggggccacaacaccaat
gtgggagccatcagtttccatccacaagcgacattgtctttggaagaatcagacgtcaac
ctggcttcctgtgccgccgatggatccgtcaagctttggagcctagaaagtgatgagccc
gttgcagacatcgaagggcactccatgcgggtggctcgtgtggcttggcacccttccgga
cgctttctggggaccacctgctatgaccactcgtggcgtctgtgggacctcgaggcccag
gaggagatcctgcaccaggagggccacagcaagggggtgcacgacctccacttccaccct
gacggctctcttgcaggaacagggggactagatgcatttggtcgagtgtgggatctccgc
actggacgctgtgtcatgttcctggagggccacctcaaggagatctacggcatcaacttc
tctcctaatggttatcacgtggcaacaggtagtggagacaacacatgcaaggtgtgggat
ttgcgtcagaggaagtgcatctacacaatccccgcccaccagaacctgctgtcttcagtc
aagttccagcctacggatgggcactacttattgacgggggcttacgacaacacggccaaa
gtgtggacacaccctggatggtctcctctcaagactctagctggccatgagggcaaagtg
atggggctggacatctcggcggatgggctgctcatcgccacctgctcctatgatcgtacc
ttcaagctctggatatctgaatga
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integrated database retrieval system
