Scleropages formosus (Asian bonytongue): 108929978
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Entry
108929978 CDS
T04919
Symbol
patl1
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
sfm
Scleropages formosus (Asian bonytongue)
Pathway
sfm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108929978 (patl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfm03019
]
108929978 (patl1)
Messenger RNA biogenesis [BR:
sfm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108929978 (patl1)
mRNA degradation factors
5'-3' decay
Decapping complex
108929978 (patl1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
LRR_RI_capping
Motif
Other DBs
NCBI-GeneID:
108929978
NCBI-ProteinID:
XP_018600461
LinkDB
All DBs
Position
16:1184220..1191292
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AA seq
769 aa
AA seq
DB search
MFRFQSLDEDCTLEEEEGLVEEEDEIDQFNDDTFGAGAIDDDWQEEHARLAELDERDKDA
ASMHLPASTSQDSLTKTPAPPPSAPPPGLEDQGGGGDLAESLARLILGADPAIAGVGTVK
MSDRVAQPQPPPSGLQLQPHSLLSYQQQSQSQHLLHRGTAPMQMNSRSIWESVGFGPVSV
TPGLAPHMEDSSLASIMKEVGLPKKPATMRSDERRDLSERVPPPRSCSPVIGSPPVRAAP
IGTPPKPPMSHPLNQQIHCPTAVHVRAPVQHRYPPPYPERLSPNTLLNIANSPLCRPPFP
AGVGPVLSQIQRAQLLNSQVRSARFCVPPLPQVGPFPRGAPAPPLLHSGGGGFRPFFGQP
PPRVGPLPPPNHGSIRHNTTHLHPQHRRLLTQRLQNRSDRGGRTGEHRNRDPYSNLMTQR
EKDWVARIQMMQLQSTDPYLDDYYYQNYYEKMEKRQETERDSSKKEHTTKLITPQVAKLE
HTYRPVQFAGSLGKLTVSSVNNPRKMIDAVVTSRTDDEEKREKQVWNKRRQILYTVEKMY
SLLLEVQDFEKKFIQTPEEQRDALLEQHKSHTVQLYNTLREREWDDRVSDEQCLMIMSVR
KGKRLVSRLLPFLPQPQAAAVIMAIARNLPALAKKDKQDQVLCWLVEPVAAVIQSMSSSA
LTDLLQELQGSEGQLPRVLQNKFGVTLLYLILSEGERMQSSDTNCQLMDDNRWTELVFSV
TRKLLEVPPASLSPPLFTPPNLLSLFSRYVDRQRLEQLQEKLQISALSR
NT seq
2310 nt
NT seq
+upstream
nt +downstream
nt
atgttccgttttcagtctttggatgaggattgtaccctggaggaggaagagggactcgtt
gaagaagaggatgagattgaccagttcaatgacgacacttttggagcaggggcaattgat
gatgactggcaggaggagcatgcccgcctggcagagctcgatgaacgagacaaagatgct
gcttccatgcacctccccgcctccacttcccaagattccctgacaaaaactccagcccct
ccaccctcagccccccctccaggtctggaagatcaagggggtggcggggacctggcagaa
tccctggcccggctgatcctaggggcggacccggcgatcgctggggtggggacggtgaaa
atgtccgatagagtggcgcagcctcagccaccaccgtcgggtctccagctgcagccccat
tcgctgctcagttaccagcagcagtcgcagtcacagcacctgctgcaccgaggaacagcg
cccatgcagatgaactcgcgcagcatctgggagagtgttggattcggcccagtcagtgtt
acacctggactcgcaccacatatggaggacagttctctggcgtccatcatgaaggaggtt
gggctgcccaagaaaccggcaacgatgaggagcgatgaaaggcgagatctctcagagcga
gtccccccgcctcgctcctgctcacctgtgatagggagtccccctgtgagggcggcgccc
attgggactcctcccaagccacccatgagccaccccctcaatcagcagatccactgcccc
acagcggtacacgtgcgagctccagtacaacaccgatacccccctccctaccctgaacgc
ctctcccccaacacccttctcaacattgctaactctcccctgtgtcgccccccattccct
gctggggtgggtcccgtcctctcccagatccagcgggctcagctgctgaattcccaggtg
cgttctgcccgattctgtgtgccaccgcttccacaggtggggccattccccaggggtgca
cctgctcctcctcttttacatagtggcggtggtggctttcggccatttttcgggcaaccc
cccccaagggtggggcccctccctcctccaaaccatggctcgattcggcacaacaccaca
cacctacaccctcagcaccggaggcttctcacccagaggctgcaaaacaggagtgaccga
ggcggccgcacaggtgagcacaggaacagggacccctacagtaacctgatgacgcaacgt
gagaaggactgggtggcccgcatacagatgatgcagctgcagagcactgacccctacttg
gatgactactactaccagaactattacgagaagatggaaaagaggcaggagacggagcgc
gacagctccaagaaggagcacacgacgaagctgatcacgccgcaggtggctaagctggag
cacacctacaggccagtgcaatttgctggctctctgggaaagctaacggtctctagcgtg
aacaaccccaggaagatgattgacgccgtggtgacaagtcgcacggatgacgaggagaag
agggagaagcaggtgtggaacaagaggagacagattctctacaccgtggagaagatgtat
agtctgctgctggaggtacaagactttgagaagaagttcatccagacacccgaggagcag
agggacgctctgctggaacagcacaagagtcacacggtgcagctgtacaacacgctgcgg
gaacgcgagtgggatgatagggtcagtgatgagcagtgtttgatgatcatgtctgtgagg
aaagggaagcgtctggtctccaggctccttcccttcttgccccagccacaggctgctgct
gttattatggcgattgcccggaacctacctgctctggcaaagaaagacaagcaagaccag
gttctgtgctggctggtggagcctgttgctgcagtgatccagtccatgtccagttctgcc
ctcactgacctgctgcaggaactccagggcagcgagggccaactgccccgtgtcctgcaa
aacaagtttggtgtgaccctgctgtaccttatcctgagcgagggtgagcgcatgcagagc
tctgacaccaactgccagctcatggatgacaatcgatggacagagctggtgttctcggtc
acgcggaagctgctcgaggtgccccccgcatccctttctcctcccctgttcactccgccc
aatctgctgtccctcttctcccgctatgtggatcggcagagactggagcagctgcaggag
aagctacagatctctgctctgtccaggtag
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