Scleropages formosus (Asian bonytongue): 108930152
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Entry
108930152 CDS
T04919
Symbol
ighmbp2
Name
(RefSeq) DNA-binding protein SMUBP-2 isoform X1
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
sfm
Scleropages formosus (Asian bonytongue)
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sfm03009
]
108930152 (ighmbp2)
03012 Translation factors [BR:
sfm03012
]
108930152 (ighmbp2)
Enzymes [BR:
sfm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
108930152 (ighmbp2)
5.6.2.5 RNA 5'-3' helicase
108930152 (ighmbp2)
Ribosome biogenesis [BR:
sfm03009
]
Eukaryotic type
Other ribosome biogenesis factors
108930152 (ighmbp2)
Translation factors [BR:
sfm03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
108930152 (ighmbp2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
AAA_19
AAA_30
R3H
zf-AN1
Viral_helicase1
DEAD
AAA_22
AAA_16
nSTAND3
ResIII
UvrD-helicase
Flavi_DEAD
T2SSE
AAA_25
ABC_tran
IstB_IS21
AAA
PhoH
SLFN-g3_helicase
Herpes_ori_bp
Motif
Other DBs
NCBI-GeneID:
108930152
NCBI-ProteinID:
XP_018600775
LinkDB
All DBs
Position
5:complement(38371421..38387731)
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AA seq
989 aa
AA seq
DB search
MEVEYFVSKTLELLRREREAEVAETRLLQQNVPLKDLQHKGVCLLKLQVTSERTSLYGRH
LVVFEPRKHVAGATLPSNNFGPGDIVGVYDSAQCSTTSQLSTGVVTRVTQAAISVAFDES
QDSLSLDGEALYNLLKLANDVTYKRLKNALTSLRAWSGGRTSSLINVLFGTSQPGTPLQS
SDIDFLNTSLDESQREAVSFALSQREVAIIHGPPGTGKTTTLVEIILQAVKCGLKILCCA
PSNVAVDNLVERLGGGKIKVLRLGHPARLLEAAHQYSLDAVLARGDATSILADIRSDIDK
ACAKIRKAHGKGERDQLWAEVRELRKELRTREDAAIIQALKGADVVLSTNTGASDDGPMK
LLPANHFDLVVIDECSQALECSCWIALLRACRCVLAGDHQQLPPTVMSPTAASNGLALSL
MERLIQMLGNSVVRMLTVQYRMNGAIMHWASEQMYQGRLIAHSSVESHLLRDLPGVVSVD
ETDVPLFLIDTAGSGLFEMEDADEQSRGNEGEADVVAMHVERLTKSGVRARDIAVIAPYN
LQVELLRHRLSHKHPQLEIKSVDGFQGREKEAVVLSLVRSNRKGEVGFLAEDRRINVAVT
RTRRHLAVVCDTQTVRHHGFLRSLVDYIMEHGEVRTAFEYLEDAMPLNYSRDQGVGQTQS
HRALAGKSKDRPPQEKTNEQRKVLEKKSYAVDRPLSHQAKNDRPFPSTGGEEVNRHVEEL
REQLIQFLKDSSRACLDFPTSLSSRDRLIVHQISEELGLKHESAGEGRERHITVSRATPK
LEPKGEQEMLEQEKEQPVEPAPADLNKQSQAGTLRTGKVDLKTLHVERMQREQARREEKT
QECKILEAGIQGQTSKKSKRAAKEKCSAKTTTLVADDDFDALISAAVKADSICGFVKCKV
SVLTLGQFCAFCNKHYCLSHHIPEIHGCGDHAKAQARKRISKEGVLYAGSGQKDRAMDPN
KKAFLQRKLESKLKDLASQRKSKPREKEQ
NT seq
2970 nt
NT seq
+upstream
nt +downstream
nt
atggaagtggaatattttgtgtccaaaaccctcgagctgctgcgaagggaaagagaagct
gaggttgcagaaacacgtttattacagcagaatgtgcctctaaaggatctgcagcacaaa
ggagtttgtctgctgaagctgcaggtcaccagtgagcggacaagcctctatggacgtcac
cttgttgtttttgagcccagaaaacatgtggcaggtgccactttacccagcaacaacttt
ggaccaggagacattgttggggtgtatgactctgcacaatgcagtacaacctcacagctg
agcactggggttgtgacccgagtaacccaggcagctatatctgtggcatttgacgagtcc
caggatagcctcagtttggatggggaggccctctacaacctccttaagctggctaatgat
gtcacatacaagaggctgaaaaatgcattgacatctctccgtgcttggagtgggggtcga
acatccagtctgataaacgtcttgttcggaacttcccagccaggcactcctttacagtca
agtgatatagacttcctgaacacaagtttggatgaatcccagagagaggctgtgtccttt
gctttgtctcagagggaagtagcaatcattcatgggccgccaggaactgggaagaccacc
actctggtagagataatcttgcaagcagtgaaatgtggtttaaagatcctgtgctgtgct
ccatccaatgtggctgtggataacctggtagagcgattgggaggaggcaagatcaaagta
ctgcgcctgggccaccctgcccgtctgctggaagcagcacaccagtactcactggacgca
gtgctggcccgtggagatgccaccagcatccttgctgatatccgcagtgacattgataag
gcctgtgcaaagataaggaaggcacatgggaagggtgaaagagatcagctctgggcagaa
gtacgtgagctacgaaaggagctgaggaccagggaagatgcggctattatacaggccctg
aagggtgcggatgttgttctgtccactaacacaggggccagcgatgatgggcctatgaag
ctgcttcctgccaaccactttgaccttgtggtgatcgatgagtgcagccaggcactggag
tgcagttgttggatcgcccttctgagggcctgccggtgtgtcctggctggggaccaccag
cagctaccacctactgtcatgtctcccacggctgcatctaatggtctggcccttagcctg
atggagcggctgatccagatgcttggcaacagtgtggtgaggatgctcacagtccagtac
cgcatgaatggtgccatcatgcattgggcatctgagcagatgtaccaaggccggctaatt
gctcacagctctgtagagagccacctgctgagggacctgcctggggtagttagcgtggat
gagacggatgtgcccctatttctcattgacacagcgggatctggtctctttgagatggag
gatgcagatgagcagtcaaggggcaatgaaggtgaagcagatgtagtggccatgcatgtg
gagagactaaccaagtcgggtgtcagggccagagatatagccgtcattgcaccttacaac
ctgcaggtggaacttcttaggcatcgactctctcataaacatccccagcttgagatcaag
tctgttgatggcttccaggggagggagaaggaggctgttgtgctttcattggttagatct
aacaggaagggtgaagtgggctttttggctgaggacaggcggatcaatgtagcagtgaca
cgaacccggcgccacctagcagtggtatgcgacacacaaacagtccggcaccatggcttc
cttcgctccctggtggattacatcatggagcatggggaggttcgcacagcttttgagtac
ctggaggatgctatgcctctgaattacagccgtgatcaaggtgtaggacaaacacagagt
cacagggccttggcaggcaaatctaaggacaggccaccacaggaaaagacaaatgaacag
agaaaggtacttgagaagaagagctatgcggtggacagaccattgtcccaccaagctaag
aatgacagacctttcccttccacaggaggggaggaggtgaacagacatgtagaggagctc
agggaacaattgattcagttcctgaaggactcaagtagagcctgcctggacttcccaaca
tcactgagttcccgtgatcgactcatagtgcaccagatctctgaagagttgggactcaaa
catgagagtgcaggggaaggcagagagcgacacatcactgtctctcgggcaacacccaag
ctggagccaaagggggaacaggaaatgctggagcaagagaaagagcagccagtagaacca
gccccagctgaccttaataagcagtctcaggcagggaccttgaggacaggcaaggtggac
ctgaaaaccctgcatgtagaacgcatgcagcgagaacaagccagaagggaagagaagacc
caggaatgcaagattctggaagcagggattcagggtcagacctcaaagaagtccaagcgt
gctgctaaagaaaaatgcagtgccaagacaaccacccttgtggcggatgacgactttgat
gcactcatcagtgctgcagtaaaagccgacagcatttgtggctttgtgaagtgtaaagtt
agcgtgctgactctggggcagttttgtgccttctgcaacaaacactactgtctgagtcac
cacatccctgagatacatggctgtggggaccatgccaaggcccaggctcgaaagagaata
agcaaagagggagtactgtatgcaggtagcggccaaaaggacagggctatggacccaaat
aaaaaggctttcctgcagagaaagctggagtccaagttgaaagacctggcatcccaacga
aaatccaagcctagagaaaaggaacagtga
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