Scleropages formosus (Asian bonytongue): 108930453
Help
Entry
108930453 CDS
T04919
Name
(RefSeq) collagen alpha-1(II) chain-like isoform X1
KO
K19719
collagen type II alpha
Organism
sfm
Scleropages formosus (Asian bonytongue)
Pathway
sfm04510
Focal adhesion
sfm04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108930453
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108930453
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sfm00536
]
108930453
Glycosaminoglycan binding proteins [BR:
sfm00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108930453
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
108930453
NCBI-ProteinID:
XP_018601207
LinkDB
All DBs
Position
1:7285140..7322337
Genome browser
AA seq
1420 aa
AA seq
DB search
MLRCVDPRTFALLVAAQLVLVAIVKCQEDDNREVGSKGQKGEPGDATDVVRLQGPEGPMG
PRGEQGPQGPQGPKGEKGDKGSPGLPGGDGKPGFPGKPGPPGPPGPPGLGGRFAAQMAGG
FDEKAGGAQMGVMQGPMGPMGPRGPPGPTGAPGPQGFQGSPGEPGEPGATGSLGARGPPG
PPGKPGDNGESGKPGKPGDRGPPGPQGARGFPGTPGLPGIKGHRGHPGLDGTKGESGAAG
VKGEAGAPGENGAPGPMGPRGLPGERGRPGSSGAAGARGNDGLSGPAGPPGPVGPAGAPG
FPGSPGAKGEAGPIGVRGAEGPPGPRGEAGTPGSPGPAGASGNPGTDGIPGAKGSAGAPG
IAGAPGFPGPRGPPGPQGATGPLGPKGLQGDPGLAGFKGEAGPKGELGPIGPQGPPGPAG
EEGKRGARGEPGSAGPIGPPGERGAPGNRGFPGQDGVAGAKGAPGERGVPGTLGPKGPNG
DPGRPGEPGLPGARGLTGRPGDPGLQGKVGPVGPAGQDGRPGPPGPLGARGQPGVMGFPG
PKGANGEPGKSGEKGPVGSPGLRGLPGKDGETGAVGPIGPVGPAGERGEQGQTGSPGFQG
LPGPTGPPGEAGKPGEQGLPGEGGAPGVIGPRGERGFPGERGGAGPQGLQGPRGLPGTPG
TDGPKGAIGPGGPSGAQGPPGLQGMPGERGAAGITGAKGDRGDNGERGTEGAPGKDGARG
LSGPIGPPGPAGPNGLKGESGPSGPPGSTGARGAPGDRGENGPPGPAGFAGPPGADGQPG
AKGETGEAGQKGEAGAPGPQGPSGAPGPQGLTGITGLKGARGAQGAPGTTGFPGAAGRVG
LPGPNGNPGPIGPPGPAGKDGPKGIRGDPGLPGRAGDPGLRGTAGPPGEKGEPGVDGPPG
SEGPSGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGGAGSSGERGPPGPVGPPG
LTGPAGEPGREGNPGSDGPPGRDGATGIKGERGNTGPAGAPGAPGAPGAPGPVGPLGKQG
DRGEAGPQGPSGPSGPAGARGMAGPQGQRGDKGEAGETGERGLKGHRGFTGLQGLPGPPG
PAGDQGVTGPAGPSGPRGPAGPPGARGKDGANGQPGLLGPSGPRGRSGENGAAGPPGPPG
PPGPPGPPGPGIDMSAFAGLSQEKGPDPLRYVRADDSSSSLREHDVEVDATIKSINSQIE
NILSPDGTRKNPARTCRDLKLSYPSWKSGNYWIDPNLGCTMDAMKVFCNLETGETCVYPN
TATIPRKNWWSTKSKDRKHVWFGETMNGGFQFSYGGNSLPPQSAEIQMTFLRLLSNEASQ
NITYHCRNSVAYLDRGSGNLKKALLLQGSNDVEIRAEGNSRFTYDVLEDGCSQHTGQWGK
TVFEYKSQKTSRLPIVDIAPMDIGGAAQEFGADIGPVCFL
NT seq
4263 nt
NT seq
+upstream
nt +downstream
nt
atgttgcgctgcgtggatcccaggacttttgcgctgcttgtagcagcccagctcgtttta
gtagccattgtcaaatgtcaggaggatgacaaccgtgaagttggaagtaagggccagaaa
ggggaaccaggtgatgctacagatgtggtgagacttcaaggaccagagggccctatgggc
ccccgtggggaacagggacctcagggacctcaggggccgaagggcgagaagggagacaag
ggaagtcctggcctcccaggcggagatggtaaacctggttttcctggaaagcctggaccc
cccgggccaccaggacccccaggccttggcggacgttttgctgctcagatggcgggtgga
tttgacgagaaagcgggtggagcccagatgggcgtcatgcaagggccgatgggacccatg
ggtcctcgtggtccgcctggacccactggagctcccggcccacaaggtttccaaggcagc
cctggagagcctggagagcctggagcaacgggctccttgggcgccaggggcccccctgga
cccccagggaaacctggagacaacggcgaatctggcaaacccggaaagccgggagaccgt
ggacccccaggacctcagggggcacgaggatttccgggaactcctggacttcccgggatc
aagggtcaccggggtcacccaggtcttgatggtaccaagggagagagtggggctgcagga
gtgaagggagaggctggagctccaggtgaaaatggtgcccctggaccaatgggcccacgt
ggtctgcctggcgaaagggggcgccctggatcttccggagctgcaggagctcgtggtaac
gatggcctgtctggtcctgctggcccgcctggtcccgttggtcctgctggagctccaggc
ttcccaggttccccaggtgctaagggtgaagctggtcccattggtgttcggggggcggag
ggtcctccaggtccccgaggagaagcagggactcctggatctcctggcccagccggtgct
tccggtaatcctggaactgatggcattcctggggcaaaaggctctgcaggtgccccaggt
attgctggtgctccgggtttcccgggaccccgggggcccccaggaccacagggagcaaca
ggacctcttggacccaaaggactgcagggtgaccctggtctggcaggattcaagggagag
gctggccctaaaggagaacttggtcctattggtccccaaggtccacctggcccagcagga
gaagagggcaagagaggagcaagaggagaacctggttcagcaggaccaattggacctcct
ggagagagaggggctcctggtaaccgtggtttcccaggtcaggatggcgtggcaggtgca
aagggtgcacccggcgaacgtggagttcctggtactctgggtccaaagggtccgaacggt
gacccaggccgtcctggagagcctggtcttcctggtgccagaggcctaactggtcgtccc
ggtgatcctggtcttcagggaaaagttggccccgttgggcctgcaggtcaggatggtcgc
ccaggaccccctggcccactgggggcccgcggtcagcctggcgtgatgggtttccctgga
cccaaaggagccaacggtgagccgggaaaatccggagagaagggacctgttggaagcccc
ggcctgagaggtctgcctggtaaagatggtgaaactggagctgtgggacccattggccca
gttgggcccgctggggagagaggagagcaaggacagactggttctcctggtttccagggt
cttcccggacctactggccctccaggtgaagcaggcaagcctggtgaacagggtcttcct
ggagagggtggagcacctggcgttattggacccagaggtgagcgaggatttccaggagag
aggggaggagctggtccacaaggtctccagggaccccgtggtcttcccggtactccagga
actgatgggcccaagggagctattggtcctggtggaccctctggtgcccaaggaccccca
ggccttcaagggatgcctggagaaagaggtgctgctggcattactggagccaagggagac
aggggtgacaatggtgaaaggggcactgagggtgctcctgggaaagatggtgcaaggggt
ttgagtggtcccattggtcctcctggtccagctggcccgaacggcctgaagggtgaatct
ggtccttcaggaccccctggctctactggtgctcgtggtgctcctggtgatcgtggggag
aatggacctccaggtcctgctggcttcgctggtcctcctggtgctgatggtcagcctgga
gctaagggagagactggagaggctgggcagaagggagaagctggagctcctggcccccag
ggtccttcaggggccccaggaccacagggcctcactggcattactggactcaagggtgct
cgcggtgctcaaggtgcaccgggcaccactggtttccctggagctgctggaagagttggc
ctaccaggccccaatggtaaccctggaccgattggccctcccggtcctgccggcaaagac
ggacctaaaggtattcgtggagatcctgggctcccagggagagcgggtgatcctggattg
cgtggaactgctggtcctcctggagagaaaggagagcctggagtagacggtccccccggt
tctgagggcccctcaggtccccaaggtctggcaggacagcgtggtattgtgggtcttcct
ggacagcgaggtgaaagaggattccctggtcttcctggaccttctggggagcctggaaag
caaggtggtgccggcagttctggtgaacgtggccccccaggtccagtgggaccacctggt
ctgactggacccgctggagagcctgggcgtgagggtaatcctggctcagatgggcctccc
gggagagatggagctactggtatcaagggtgagcgtgggaacacaggccctgctggtgcc
cccggagcacctggggcacctggagctcccggtcctgtcggccctctgggcaaacaggga
gacagaggagaggctggacctcaaggaccttctggaccttctggcccagctggggctaga
ggaatggctggaccccaaggccaacgtggagacaagggtgaggctggagagacgggtgag
agaggactgaagggacacagaggcttcactggtctgcaaggtcttcctggacctcccggt
cctgctggtgatcagggtgttactggacctgcaggtcctagtggacccagaggacctgcc
ggcccacctggtgcccggggaaaggatggagccaatggacagcctggtcttctgggtccc
tctggacctcgtggtcgatctggagaaaatggtgctgctggtcctcctggtcctcctggc
ccccctggtccacctggcccaccagggcctggcatcgatatgtctgctttcgcaggcctc
tcccaggagaaaggcccagatcccctgcggtacgtgagggcggatgactcctcgtcctca
ctaagggaacatgatgtggaggttgatgctaccatcaagtccatcaacagtcagattgag
aacatccttagcccagatggcactaggaaaaacccagcccgcacctgcagggacctgaaa
ctgagctaccccagctggaagagtgggaattactggattgaccccaaccttgggtgcacc
atggatgccatgaaggtcttctgcaacctggagacaggggagacttgcgtctacccaaac
actgccaccatcccacgcaagaactggtggtccaccaagagcaaggaccgcaagcacgtg
tggtttggagaaaccatgaatggaggcttccagttcagctacggcgggaacagtctgcca
ccccaaagtgctgagatccagatgacgttcctgcgactgctgtctaatgaggcctcacag
aacatcacctaccactgccgcaacagcgtggcataccttgatcggggaagtggcaacttg
aagaaggctctactgctgcagggctccaatgacgttgagatccgtgccgagggcaacagt
cgcttcacttacgatgtgctggaggatggctgttcgcaacacacagggcagtggggcaag
actgtatttgagtacaaatcacagaagacatcccgtcttcccatcgtggacattgctccc
atggacatcggaggagcagcccaggagtttggagcagacatcggccccgtctgcttcttg
taa
DBGET
integrated database retrieval system
