Scleropages formosus (Asian bonytongue): 108930583
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Entry
108930583 CDS
T04919
Symbol
ptbp1
Name
(RefSeq) polypyrimidine tract-binding protein 1 isoform X1
KO
K13218
polypyrimidine tract-binding protein 1
Organism
sfm
Scleropages formosus (Asian bonytongue)
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfm03019
]
108930583 (ptbp1)
03041 Spliceosome [BR:
sfm03041
]
108930583 (ptbp1)
Messenger RNA biogenesis [BR:
sfm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
108930583 (ptbp1)
Spliceosome [BR:
sfm03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
108930583 (ptbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_8
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
108930583
NCBI-ProteinID:
XP_018601408
UniProt:
A0A8C9SJJ6
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All DBs
Position
9:7121577..7138353
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AA seq
570 aa
AA seq
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MDGRLETDLYPLGSGYPTEIDSVHDITVGTKRGSDELFSSCVSNGPYIMSNSSGAANGND
SKKFKGDIRSPGIPSRVIHVRKLPNDINEAEVISLGLPFGKVTNLLMLKGKNQAFIEMNT
EEAAQTMVTYYSSVTPVIRNHPIFMQYSNHKELKTDNSPNQVRAQAALQAVNAVQTGSMT
MASVDTSGMGAHSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQY
SDGLTAQHAKLALDGQNIYNACCTLRINFSKLTSLNVKYNNDKSRDYTRPDLPTGDSQPT
IDHQAMAAAFGAPGIISATPYTGAHGFPPAFAIQQAAGLTMPGVPGALASLAIPGAAAAA
AAAGRLSFSGLTSGQCVLLVSNLNPERVTPQCLFILFGVYGDVMRVKILFNKKENALVQM
ADATQAQLAMSHLNGQKLHGKALRVTLSKHTNVQLPREGQEDQGLTKDFSNSPLHRFKKP
GSKNYQNIFPPSATLHLSNIPPSVVEDDLKQLFASSGALVKAFKFFQKDRKMALIQMGSV
EEAIQSLIEFHNHDLGENHHLRVSFSKSTI
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atggacggccgtttagagactgatttgtatcctctgggatccggttaccccactgaaata
gacagtgtccacgatattacagttggtacaaagagaggatctgacgagctgttctcctct
tgcgtttctaacggaccctatatcatgagcaactcatctggagcagctaatggaaacgac
agtaagaagttcaaaggtgacatccggagccctggcattccgtcacgtgtcatccatgtt
cgtaagcttcccaatgacatcaatgaggctgaggtgatctccctggggctaccctttggc
aaagtgaccaacctgctcatgctgaaaggaaagaaccaggcattcattgaaatgaacaca
gaagaggctgcacagaccatggtcacctattactcctctgtcactccagtcatcaggaat
caccctatattcatgcagtactcaaatcacaaggagctgaaaactgacaactcacccaat
caagtgagagcccaagctgcattgcaggcagtgaatgctgtccagactggcagcatgacc
atggctagtgtggatacatcaggcatgggtgcccacagtcctgttctacgcatcattgtg
gagaacctcttctacccagtcactcttgatgttcttcaccagatcttctccaaatttgga
acagtgttgaagattataacatttaccaaaaacaaccagttccaggccttgctccagtat
tctgatggcctgactgctcagcatgctaaactggctctggatgggcaaaacatatacaat
gcctgctgcactctgcgtatcaacttctcaaagttaacaagtctcaatgtcaagtataac
aatgacaagagccgggactatacacggccagaccttcctactggggacagccagcccacc
atcgatcatcaggccatggctgctgcctttggtgctccaggaatcatctcagctacccca
tatacgggagcccatgggttccctcctgcttttgccattcagcaggcagcaggtttgaca
atgcctggagtccctggggctctagcctcactggccatccctggtgcagctgcagcagct
gcagccgctggtcgccttagcttctctgggcttactagtgggcagtgtgtcctgcttgtc
agcaatcttaaccctgagagagttacgccccaatgcctctttattcttttcggtgtatat
ggtgatgtcatgagagtgaagattctcttcaacaagaaggaaaatgctcttgtgcagatg
gcagatgcaacccaggcccagcttgcaatgagccatctcaatggtcagaagctgcatggg
aaggcactgcgtgttactctgtcaaaacacacaaatgtgcagctgccccgggaaggacag
gaggaccaggggctaacgaaggacttcagcaactcgccactgcatcgctttaagaaacct
ggttccaaaaactatcagaacatcttccctccttctgcaaccttgcacttgtccaatatc
ccgccttcagtagttgaagatgaccttaagcagctgtttgcaagttctggtgccttggtt
aaagccttcaagttcttccagaaagatcgcaaaatggccctgatccagatgggatctgtg
gaggaggcaattcagtcgttgatcgaattccacaatcatgaccttggcgagaatcaccat
cttagggtgtccttctcaaagtctaccatctga
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