Scleropages formosus (Asian bonytongue): 108931527
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Entry
108931527 CDS
T04919
Symbol
upf2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
sfm
Scleropages formosus (Asian bonytongue)
Pathway
sfm03013
Nucleocytoplasmic transport
sfm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108931527 (upf2)
03015 mRNA surveillance pathway
108931527 (upf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfm03019
]
108931527 (upf2)
Messenger RNA biogenesis [BR:
sfm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
108931527 (upf2)
mRNA cycle factors
P-body specific factors
108931527 (upf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
108931527
NCBI-ProteinID:
XP_018602824
LinkDB
All DBs
Position
2:11873538..11889980
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AA seq
1276 aa
AA seq
DB search
MPAECKKLINMEDKEAFSNKEKEKERDIERRPASSREKGKEEAKVSGKKDSSKAAEEKKR
RLEEEKRKKEEKERKKKEEEKVKAEEEQKKKEEEEEVEKKMQEEEEKRQREEEAARLKEK
EEGHQLHQEAWERHQLRKDLRNKNQNAQEGRPEEAFFSRLDSSLKKNTAFVKKLRTLTEQ
QRDSLSHDFASLNLSKYIAEAVGSVVEAKLKISDVGCAVHMCSLFHQRYADFAPLLLQAW
KKHFEARKEEKTPNVSKLRTDLRFIAELTIVGIFTDKEGLSLIYEQLKNIINTDREAHTH
VSVVISFCKHCGDDIAGLVPRRVKLAAEKLNLVFPPSEIISAEKQQPFQNLLREYFTSLT
KHLKKDHRELQNIERQNRRILHSKGELSEDRHKQYEEFATSYQKLLANTQSLADLLDENM
PELPQDKTVQEEHGPGIDIFTPGKPGEYEMEGGIWEDEDARNFYENLVDLKAFVPAILFK
DNERNSQSRDKEEAKDPKDGKETKEVLGPGTDELELDLEALDIADDTLEMEAGDEVESDE
LAKKLLDEQEQEDEEASTGSHLKLIVDAFIQQLPNCVNRDLIDKAAMDFCMNMNTKSNRR
KLVRALFTVPRQRLDLLPFYARLVATLHPCMSDVAEDLCSMLKGDFRFHIRKKDQINIET
KNKTVRFIGELAKFKMFSKTDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPDSHL
RTSVLLDQMMRKKQAMHLDARYVTMVENAYYYCNPPPVEKAVRKRRPPLQEYIRKLLYKD
LSKVTTEKVLRQMRKLPWQDPEIKSYLICCLVNIWNVKYNSIHCVANLLAGLVAYQEDVG
IHVVDSVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLFSFISFGVN
PDGSPSPLDPPEHLFRIRLVCTLLDTCGQYFDRGSSKRKLDCFLIYFQRYIWWKKSLDVW
TKDHLFPIDIDYMISDTLELLRPKARLCSSLEEAVMQVTELEREVLVKLGLAVEKDGRAS
GALGEGGTLDDEDEDDDEEGGAETEEQSGNESEMNEPEEEEGSENEEEEREEEEEENTDY
LTDSNKENETDDENNEVTIKGGGLRHVACAEDEDFIQALDRMMLENLQQRSGESVKGHQL
DVAIPLQLKSQLKKAPPPACSGEGDSELADTMQFVMLTRKGNKQQQFKILNVPLSSHLAA
NHFNQQQAEQEERMRMKKLTLDINERQEQEDYQEMMQSLAQRPAPANTNRERRPRYQHPK
GAPNADLIFKTGGRRR
NT seq
3831 nt
NT seq
+upstream
nt +downstream
nt
atgcctgctgaatgcaagaagctaattaacatggaggataaagaggcattcagcaacaag
gaaaaggagaaggagagagacatagaaaggcgaccggcctcttcccgggaaaaaggaaag
gaagaggcgaaggtgagcggaaagaaagacagcagcaaagcagctgaggagaagaagcgg
aggctggaggaagagaagaggaagaaggaggagaaagagcgcaagaaaaaggaggaggag
aaagtgaaagcagaagaagagcaaaaaaaaaaggaggaggaggaggaggtagagaagaag
atgcaggaggaggaagagaagaggcagcgtgaggaagaggcagcacgactcaaggagaag
gaggagggccaccagctccaccaggaggcttgggaacggcaccagttacgcaaggatctg
cgcaacaagaaccagaatgcacaggagggccgccctgaggaagccttctttagccgactg
gactctagcttgaagaagaacacggccttcgtcaagaagttgaggaccctgacagagcag
cagcgtgactcactctcccatgactttgcctcactcaacctcagcaagtacattgctgaa
gctgtgggatccgtggtggaagcaaagctaaaaatctctgatgtaggctgtgccgtgcac
atgtgttcccttttccatcagcgatatgccgacttcgccccacttctgctgcaggcctgg
aagaagcactttgaggcacgcaaggaggagaagacgcccaatgtgagcaagctgcgcact
gacctgcgcttcatcgctgagctcaccattgtgggcatcttcactgacaaggaaggcctg
tcacttatttatgagcagctgaagaacatcatcaacacagaccgtgaggcacacacacat
gtctcagtggtcatcagcttttgtaagcattgtggggatgacattgctggcttggtgcca
cgcagagttaagctggcagcagagaagttgaacctggtctttcccccaagtgagattatc
agtgcagagaagcagcagcccttccagaacctgctaagggagtacttcacctcccttacg
aagcacttgaagaaggaccatcgtgagctgcagaacattgaaaggcagaaccgacgtatt
ctacattccaagggggagctgagcgaagatcgacacaaacagtatgaagagtttgccacc
tcgtaccagaagttactggctaacacacaatccctagcagaccttcttgatgaaaatatg
ccagaacttcctcaggacaagaccgtgcaagaagaacatggccctggcattgacattttc
acacctggaaagccaggggagtatgaaatggagggaggaatatgggaagatgaggatgca
cgcaacttctacgagaatttggtggacctaaaggcgtttgtccctgctatcctgttcaaa
gacaatgagaggaacagtcagagtcgagacaaggaagaggcaaaagatcctaaggatggg
aaggagacaaaggaagtgttgggcccaggcacagatgagcttgagctggatctggaggct
cttgacattgcagatgacactttggagatggaggcaggtgatgaagttgagagtgatgaa
ctggcaaagaaactcctggatgaacaagaacaagaagatgaggaggcaagcacagggtcc
cacctgaagctcattgtggatgccttcatccagcagctacccaactgtgtcaacagagac
ctgatagacaaggctgcaatggatttctgcatgaacatgaacacaaagtctaacaggagg
aaacttgtgcgagcactcttcactgtcccaagacaacgactggacctgctccccttctat
gcccggctggtagccacattgcacccatgtatgtctgacgtggcagaagacctgtgctca
atgctgaaaggcgacttcaggttccatataaggaagaaagaccagatcaacattgaaaca
aaaaacaaaactgtgagattcattggagaacttgccaaattcaagatgttctctaaaacg
gatactctgcattgtctgaagatgttgctgtcagacttttctcatcaccatattgagatg
gcctgcacgctgctggaaacctgtggccggttcctcttcaggtcaccagactcacacttg
cgcactagtgtgctcttggaccaaatgatgcggaagaaacaggcaatgcacctggatgca
cgctatgtgaccatggtagaaaatgcctactattactgtaacccccctccagtggagaag
gctgtcaggaaaaggaggccacccttgcaggagtacatccgtaaactcctctacaaagac
ctctccaaggtcaccaccgagaaggtgctcaggcagatgcgtaaactgccttggcaggac
ccagaaatcaagagctaccttatctgctgccttgtgaacatctggaatgtcaagtacaat
agcatccactgtgtagccaacttacttgcaggactggtggcctatcaagaggatgtggga
atccatgtggttgacagtgtgctcgaggacatccgcctgggcatggaggtgaaccagccc
aagttcaaccagcgacgcattagcagtgcaaagttcctgggggagctctataactacagg
atggtggaatcagcagtcatcttccgtactctgttctccttcatctcatttggggtaaac
ccggatggttcgcccagcccactggaccctccagaacacctttttcgcattcgcctggtc
tgtactttgctggacacttgtggccagtactttgatcgtggatccagcaaaaggaagctt
gactgcttccttatctactttcagcgatacatctggtggaagaagagtttggatgtctgg
acaaaggatcacctgttccccattgacatcgactacatgatcagtgacactctggaactg
ctgaggccaaaggcacgcctatgcagttcactggaggaggctgtcatgcaagtgactgag
ctagagagagaggttctcgtcaagctgggtcttgctgtggagaaggatggcagagcatct
ggtgccctaggtgaggggggtacccttgatgatgaagatgaggatgatgatgaagaggga
ggggctgagacagaggagcagtctgggaacgagagcgagatgaatgagccagaagaagaa
gaggggtcagaaaatgaagaagaagaacgggaggaagaggaggaggagaacacggactac
ctgacggactccaacaaagagaatgaaacagacgacgagaacaacgaggtgaccataaag
ggaggcggtctacgacatgtggcctgtgcagaagatgaggatttcattcaggcccttgac
aggatgatgctggagaaccttcagcagcgtagcggcgagtctgtaaagggccaccagctg
gatgtagccattccactgcagctcaagagccagctgaagaaggccccgcccccagcttgc
agtggggagggtgactctgagctggctgacaccatgcaattcgtcatgctcaccaggaag
ggaaacaagcagcagcagtttaagatcctcaatgttccgctgtcctctcatctggcggcc
aatcacttcaaccagcagcaagccgagcaggaggagcggatgcgaatgaagaagctcacc
ttggacatcaatgagagacaggaacaggaggactaccaggagatgatgcagtccctggct
cagagaccagctcctgctaacacaaaccgggagagacgaccacgatatcagcacccaaaa
ggagcccctaatgcagacctcatcttcaaaacaggcggaaggaggcgctga
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