Scleropages formosus (Asian bonytongue): 108931978
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Entry
108931978 CDS
T04919
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sfm
Scleropages formosus (Asian bonytongue)
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sfm03016
]
108931978
Enzymes [BR:
sfm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
108931978
Transfer RNA biogenesis [BR:
sfm03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
108931978
Prokaryotic type
tRNA splicing ligases
108931978
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
108931978
NCBI-ProteinID:
XP_018603615
UniProt:
A0A8C9QNC9
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All DBs
Position
5:8511141..8522850
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AA seq
505 aa
AA seq
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MSRTYNDELQFLDKLNTNCWRIREGFVPNMQVEGLFYVNEPLEKLMFEELRNACRGGGFG
GFLPAMKQIGNVAALPGIVHKSIGLPDVHSGYGFAIGNMAAFDMNNPAAVVSPGGVGFDI
NCGVRLLRTNLDEGDVQPVKEQLAQSLFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPTKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYND
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDNITVNDRQLACARITS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFSKVFGTTPDDLDMHVIYDVSHNIAKVEE
HMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDRLADMGIAIRVASPKLVMEEAPESYKNVTD
VVDTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcggacttacaatgacgagttacagtttctggataaactgaacacgaactgctgg
agaattcgggaaggatttgttcccaacatgcaggtcgagggacttttctacgtgaacgag
ccgctggagaagttgatgtttgaggagcttcgaaacgcgtgtcgagggggagggttcggt
ggatttcttcccgccatgaagcaaattggcaacgttgctgctctccctgggatcgtgcac
aaatccatcggcctccccgacgtccactccggatacggttttgctattggaaacatggct
gccttcgacatgaacaatcctgccgcggtcgtgtctccaggcggcgtcggcttcgacatc
aactgcggggtgcggctcctgcggaccaacctggacgagggggatgtgcagccggtgaag
gagcagctggcccagtccctcttcgaccacattcctgtgggggtgggatccaagggcgtc
atccccatgggggctaaggacctggaggaggccctcgagatgggtgtggactggtctctg
agggagggctatgcttgggcagaggataaagagcactgcgaggaatatggccgcatgctg
caagctgaccccacaaaggtctcctccaaggcaaaaaagcgagggctgccccagctggga
acattaggtgcaggaaaccactatgcagagattcaggtcgtggacgagatctataatgac
tatgccgctaagaagatgggcatcgatcacaagggccaagtgtgcgtgatgatccacagc
gggagccgaggcctgggccatcaagttgccacagatgccttggttgccatggagaaggca
atgaagagggacaatatcacagtgaacgacaggcagctggcctgtgctcgcatcacctcc
cccgagggtcaggactacctaaagggcatggctgctgctgggaactatgcctgggtgaac
cgctcctccatgactttcctcaccagacaggccttctctaaggtgtttggcaccactccg
gatgaccttgacatgcacgtgatttacgatgtgtcccacaacatcgccaaggtggaagaa
cacatggtggatggcaaacagaagaccttgctggtgcaccgcaagggctccacccgtgcc
ttccctcctcaccatccacttatccctgttgactaccagctgactggacagcctgtattg
attgggggcactatgggcacctgcagctacgtcctaacgggcactgagcagggtatgacg
gagaccttcggcaccacctgccatggcgcgggtcgtgccttgtcccgggccaagtctcgc
cgcaacctagactttcaggatgttctcgatagactggcagatatgggaattgccatcagg
gtcgcatcacccaaactggtcatggaagaggcacctgaatcatacaaaaacgtgaccgat
gtagtcgacacttgccatgatgctggaatcagtaagaaagccatcaagctgaggcccatc
gcggtgattaaaggttaa
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