Scleropages formosus (Asian bonytongue): 108932039
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Entry
108932039 CDS
T04919
Symbol
rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit isoform X1
KO
K07466
replication factor A1
Organism
sfm
Scleropages formosus (Asian bonytongue)
Pathway
sfm03030
DNA replication
sfm03420
Nucleotide excision repair
sfm03430
Mismatch repair
sfm03440
Homologous recombination
sfm03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
108932039 (rpa1)
03420 Nucleotide excision repair
108932039 (rpa1)
03430 Mismatch repair
108932039 (rpa1)
03440 Homologous recombination
108932039 (rpa1)
03460 Fanconi anemia pathway
108932039 (rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sfm03000
]
108932039 (rpa1)
03032 DNA replication proteins [BR:
sfm03032
]
108932039 (rpa1)
03400 DNA repair and recombination proteins [BR:
sfm03400
]
108932039 (rpa1)
Transcription factors [BR:
sfm03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
108932039 (rpa1)
DNA replication proteins [BR:
sfm03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
108932039 (rpa1)
DNA repair and recombination proteins [BR:
sfm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
108932039 (rpa1)
MMR (mismatch excision repair)
108932039 (rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
108932039 (rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
IBR
CATSPERD-E_C
Motif
Other DBs
NCBI-GeneID:
108932039
NCBI-ProteinID:
XP_018603703
LinkDB
All DBs
Position
10:12427033..12451262
Genome browser
AA seq
657 aa
AA seq
DB search
MSRKLFPRVREEENLAPDVERKGLGRARAAKRERKQVGCSVASHHLYTKKMTTKLTEGAI
EALTKGNTVNNAVLQVVNIRKIESGSGPARFRLMMSDGLHTMSAFMLSTQLNPMAEQNLV
APNCVCLIKKNVTNVLKDGRRVVIILDMEVLRPAEEVPGKIGDPTPYVEGQTKVAPAPPS
APSRTLQPQNGHSIPVSKGPSRDFAKKAPSTPGGSSKVVPIASLNPYQSKWTVRARVTNK
SGIRTWSNSRGDGKLFSMEIVDESGEIRVTGFNQEVDKFFSLIEPGKVYYISKGTLKIAN
KQYTSLKNDYEMTLNGESTIIPCEDTQDVPMVQCNFVSISDLETRDKDAIVGEASHFLLD
VIGVCRSVEDITRITTKSSREVSKRTLSLMDMSGKVITVTLWGEEAEKFDGTGQPIMAIK
GARLSDFGGRSLSALFSSTVMINPDIPEAYKLRGWYDKEGHALDGQSMTELKSGGGGGVN
TNWKTLMDVKMEHLGHGDKADYFSCVATIVYLKKENSLYQACPSQDCNKKVVDQHNGMFR
CEKCDKEFPNFKYRLILSANIADFGDNQWVTCFQESAETILGQNAAYLGQLKDSNEAAFE
EVFQQANFKTYIFRNRVKLETYNDESRIKATVMDVKPVDHKEYSKRLIMNIRKLSAQ
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgtcacggaagttgtttccccgcgtccgcgaggaagaaaatttggcgccagacgtggag
cggaaaggactaggaagagcgcgcgcagccaagcgagagagaaagcaagtcggttgttct
gttgcgtcccatcatctgtacaccaagaagatgaccacgaagctcacagagggggccatc
gaggctctgaccaagggcaacacagtgaacaatgcagtgctccaggttgtgaacatacgt
aaaattgaaagtggcagtgggccagcccgatttcgtctaatgatgagtgatggcctgcat
acaatgtctgctttcatgctgtccactcagctgaatccaatggctgagcagaatttggtg
gcacccaactgtgtatgcctcataaaaaagaatgtgacgaatgtcctgaaggatgggaga
cgtgtcgtaatcatcctggacatggaggtcttgagaccagctgaggaggttcctggaaag
attggcgatcccacaccatatgtagaaggtcagacaaaggtggctccagccccccccagt
gctccatctcgtactctgcagccacagaatggacacagtatacctgtgagtaaggggccc
agtcgagactttgcaaagaaggccccatcaacccccgggggttcatccaaggtcgtcccc
atcgccagcctcaacccctaccagtccaagtggaccgtccgtgcacgtgtcaccaacaag
agtggtatccgtacttggagtaactctcgcggtgatggcaagctcttctctatggagatt
gtagatgagagtggagagataagagtgactggttttaaccaggaagtggacaaattcttc
agcctcattgagcctggtaaggtgtactacatctccaagggtaccttgaagattgctaac
aagcagtacacatctctgaagaatgattatgaaatgaccctcaatggtgaatccaccatc
atcccttgtgaggacactcaggacgtacccatggtgcagtgcaactttgtgtccatcagt
gacctcgagacacgtgacaaagatgccatagtgggtgaggcttctcattttttgctagat
gtgattggtgtctgtcggagtgtagaggatatcactcgcatcacaaccaagtccagccgt
gaggtctccaaacgcactctcagcctgatggacatgtctggaaaagttatcacagtcact
ctatggggcgaagaggcggagaaatttgacggcacggggcagcccatcatggcaatcaaa
ggagcacggctttctgacttcgggggacgctctctttccgctctcttcagcagcactgtg
atgattaaccctgacatccctgaggcctacaagctgagaggatggtatgacaaagagggc
catgcactggatgggcagtctatgacagagctgaagtcagggggtggtggaggggtgaac
accaactggaaaaccctgatggatgtcaagatggagcacctggggcatggtgacaaggct
gattacttcagctgtgtggccactattgtctacctgaagaaggagaactctctctatcag
gcctgcccttcccaggactgcaacaagaaggtggtggaccagcacaatggcatgttccgc
tgtgagaagtgtgacaaggagtttcccaactttaagtaccgtctcatcctgtctgccaat
attgcagactttggggataaccagtgggtgacctgcttccaggagagtgcagagaccatt
ctgggccagaacgcagcctacttgggtcagcttaaggactcgaatgaggcggcctttgaa
gaggtcttccaacaggccaactttaaaacatacatatttcgcaatagagtcaagttggag
acttacaatgacgagtcaagaattaaggcaacggtgatggacgtcaagcctgtggatcac
aaggagtacagcaagagactcatcatgaacatcaggaagttgtctgcgcagtag
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