Scleropages formosus (Asian bonytongue): 108932148
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Entry
108932148 CDS
T04919
Symbol
brip1
Name
(RefSeq) Fanconi anemia group J protein
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
sfm
Scleropages formosus (Asian bonytongue)
Pathway
sfm03440
Homologous recombination
sfm03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
108932148 (brip1)
03460 Fanconi anemia pathway
108932148 (brip1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfm03400
]
108932148 (brip1)
Enzymes [BR:
sfm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
108932148 (brip1)
DNA repair and recombination proteins [BR:
sfm03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
108932148 (brip1)
FA (Fanconi anemia) pathway
Downstream FA components
108932148 (brip1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
DEAD
DUF6399
Motif
Other DBs
NCBI-GeneID:
108932148
NCBI-ProteinID:
XP_018603883
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All DBs
Position
10:25609248..25639517
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AA seq
1272 aa
AA seq
DB search
MAATAVEYTIGGVKIQFPCKAYPSQLAMMNSIVRGLNHGHHCLLESPTGSGKSLALLCSA
LAWQQAQYAKAEKEGMSHNEFKKPEVTTPCQCACHASRGHSMPRSGVTEGSVTPIVDLTG
LDTVTQHTHPPVTDNYRPRSSTLASRLSEKRQASLSANADDDFMPDRKRIRSLVVDQKER
KRRCLEQGVIIISDDLQGETPITEACTSTIESPSSCFLCPCDGVKRGAKAAEKTKDKDKA
NNGGSCKKAVPKIFFGTRTHKQIAQIAHELKRTFYTSTPMTILSSRDHTCVHPEVIQHTN
RNERCKELLEGKNGQTCRYYHNVHKMRDQGTLQWVHGLQQAWDIEELVRLGSRLRCCSYF
AARELMQEAHIVFCPYNYLLDPLIRESMEINLKGQVVVLDEAHNIEDCARDSASYTLSQT
QLLAARNEIDGMVYHNIRPIHHGPLGAFCCSLLNWIQESCGALSERDYETSCKVWTGAEV
LVIFHGLGITADTFSVLQKHLAAVLEKEERVGLVNGQEDMVEVPTLSAPTQTVLKSLFMV
LDFLYRNNCSFAEDYRVALQQTYVWTTQNDPPDLPDAQGFFARRHRRRQGARTKTLVYTL
SFWCLNPAVAFTDLSGSVRTIVLTSGTLSPMGSFSSELGVNFSIQLEASHVISKSQVWVG
TLGNGPQGRKLCATFQHAETFAFQDEVGALLVRICQAVARGVLCFLPSYKMLDKLRERWT
NTGLWEQIEQRKIIVTEPRGGARSDFDELLQSYYDAIKDPGHRDGALLIAVCRGKVSEGL
DFTDDNARAVVTIGIPFPNIKDLQVELKMKYNDQHSKTRGLLSGSHWYEIQAYRALNQAL
GRCIRHRNDWGALILVDDRFRCNPNKYITGLSKWVRQLVQHHNTFGGAMQSLVTFSENQQ
GAATARANGSCPPEQTEPTKWLPSPSTLSLLLPSTNPTEKATEDPPQDFTPRPVQQVSGQ
RVLDPPIPEATTSYKSQSDTQDGCKPVTQQPWRSADAPQYYGRDICALSSPQPLNPFFTS
TPVTSHLRMPIFQTSDHHREANWEPALEESVETLAFHVPITEVELPLNAVIDSLGQEESL
VHSLRKDPELSPEGFTSACNAPVDVQTSPPEDEDEQEEDQTIFFTPELFETEDCDEDRGV
SPQGTACCVELGTKGDLLLCKAAAEVLSEDLFGSEQGCRTLNPAPCDGQEGGTHSPLKPL
VITDYEHMACNSDSKDGAMQKAEGQLDNRQGRNWANRLSRSKQKGPQTSAGKLTSFFPFN
SHDKSPPSLKTD
NT seq
3819 nt
NT seq
+upstream
nt +downstream
nt
atggctgctactgccgtcgagtacaccataggaggtgtgaagatccagtttccttgcaag
gcctacccctctcagctggcaatgatgaattcaatcgtgcgtggcctgaaccatggtcac
cattgcctgctggagagccccaccggcagtggcaagagcctcgctctgctctgctcagcc
ctagcttggcaacaggctcaatacgctaaggcagagaaggagggaatgtctcataatgag
ttcaagaagccagaggtcactacaccctgtcagtgtgcctgccatgcttcgagagggcac
agtatgcccagatctggtgttacagaggggtcagtaacccccattgtggatcttacaggc
ctggacacagtgacacagcacacacatcctcctgtcacagacaactacaggcccaggagc
agcaccctggcctcccggctctcagagaaacggcaagcttccctcagtgcaaacgctgat
gatgacttcatgccagataggaagcgaatccgcagtcttgttgttgatcaaaaggagagg
aagaggagatgtcttgagcagggagtgatcatcatcagtgatgatcttcagggtgagacg
ccaataacagaggcctgcaccagtacaatagagtctccctctagctgcttcctatgccca
tgtgacggggtcaaaaggggggcaaaggcagctgaaaagacgaaagacaaggataaagct
aataatggtggcagttgtaagaaggcggttcccaagatcttcttcggcacacgaactcac
aagcagattgcacagattgcccacgaactgaaacgcaccttctacaccagcacaccgatg
accatcttgtccagccgggaccatacctgcgtgcatccggaggtcattcagcacaccaac
cgtaacgagcgctgcaaggaacttctggagggcaagaatggccagacatgccggtactac
cacaatgtgcataagatgcgggatcagggaacgttgcagtgggtccatgggctgcagcag
gcttgggacatcgaggagctggtgcggctgggcagtcggctgcgctgttgctcctacttt
gctgctcgtgagctcatgcaagaggcacacattgtcttctgcccgtacaactacctgcta
gatccactcatccgtgaaagtatggagatcaatctgaagggccaggtggtggtgttggat
gaggcccacaacattgaggactgtgcccgtgacagtgccagttacacgctcagccagacc
cagctgcttgctgctcgcaacgagattgatggcatggtgtaccacaacatccggccgatt
caccacgggcctctgggagccttctgctgcagccttctcaactggatacaagagagctgc
ggtgccctgtcagagagagattacgagacatcttgcaaggtttggacaggggcagaggtg
cttgtcatcttccatggtctaggcatcactgctgacaccttctcagtgctacagaagcac
ctggcagccgtactagaaaaggaggagagagtcggcctcgtgaatggacaggaggacatg
gtggaggtgcccaccctcagcgcacccactcagactgtgctcaagagccttttcatggtg
cttgatttcctctacagaaataactgcagtttcgctgaggactaccgcgtggccctccag
cagacctatgtctggactacccagaatgacccacctgacttgccagatgcccagggcttc
tttgcccgtagacaccgtcgccgtcagggggctcgcacaaagactctggtgtacactctg
agcttctggtgtctaaatccagctgtggcctttacagacctgagtggctccgtccgaacc
attgtcctgacatctggcacgctgtcacccatgggctccttctcttcagagctaggggtc
aacttctccatccaactggaagccagtcatgtcatcagcaagtcccaggtgtgggtgggc
accctgggaaacggcccccagggaaggaaactgtgcgccaccttccagcatgcagagaca
ttcgccttccaggatgaggttggcgcccttctcgtgagaatctgccaagcggtggcacga
ggcgtgctctgcttcctaccatcctacaagatgttggacaagttacgggagcgctggaca
aacacgggcctgtgggagcagattgagcagaggaagattattgtcacagagcccaggggt
ggggccagaagtgactttgatgagctgctacagagttactatgatgccatcaaggacccg
ggacatagagatggcgcactgctgattgctgtatgcaggggaaaagtgagcgagggacta
gacttcactgatgacaacgccagggctgtggtcaccattgggatccccttccccaacatc
aaggacctacaggtggagctcaagatgaagtacaatgaccagcactcaaaaacccgtggc
ctcctgtccggtagccactggtatgagatccaggcctaccgtgccctcaaccaagccctg
ggcaggtgcatccggcacaggaacgactggggggcgctgattctagtggatgatcgcttc
aggtgtaaccctaacaagtatatcacaggcctttcgaagtgggtgcgtcagcttgtgcag
catcataacacctttggtggcgccatgcagtcgttggtcaccttctctgagaaccagcag
ggggcagcgacagcccgtgcaaatggctcctgcccacccgagcagacggagcctacaaaa
tggctcccatccccctccactctgtccttgctgctcccttccacaaatcctactgagaaa
gcaactgaggacccaccccaggatttcacaccacggccggtgcaacaggtgtctggccag
agggttttggatccgcccatccctgaagctaccaccagctacaaaagtcagagtgacaca
caagacggctgcaaacctgtgacgcagcagccttggcgttcggctgatgccccccagtac
tacggcagggacatctgcgccctctcttcgccacagccattaaatcctttcttcacctcc
actcctgtgaccagccacttaaggatgcccatcttccagacaagtgaccatcacagggag
gccaactgggagcctgccctggaggagagtgttgagaccctagcatttcatgtgcctatt
acggaagtggagctccctctgaatgcagtcattgacagcttaggacaggaggagagcttg
gtccactctcttagaaaggaccctgaactctcccctgaggggttcacgtcggcatgtaat
gcccctgttgatgtacaaacttcaccacctgaggacgaggatgaacaggaggaagatcag
accatcttcttcacaccagagctttttgagactgaagattgcgatgaagataggggagtg
tcaccacaggggacagcatgttgtgtagaactgggcaccaagggtgaccttcttctctgc
aaggcagcagctgaagtgctgtctgaggacctttttgggtctgaacagggctgtagaaca
ttgaatcctgctccctgtgatggccaggagggtggcactcactcacctctcaagccactt
gtaataacagactatgagcatatggcatgtaattcagacagtaaggatggggctatgcag
aaggcagagggccagctggacaacagacagggcaggaactgggcaaataggctctctagg
tctaagcagaaggggccccagacatcagcaggtaaacttacatctttctttccctttaat
tcccatgataaaagccccccatccctcaaaactgattag
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integrated database retrieval system
