Scleropages formosus (Asian bonytongue): 108933153
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Entry
108933153 CDS
T04919
Name
(RefSeq) collagen alpha-1(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
sfm
Scleropages formosus (Asian bonytongue)
Pathway
sfm04382
Cornified envelope formation
sfm04510
Focal adhesion
sfm04512
ECM-receptor interaction
sfm04518
Integrin signaling
sfm04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108933153
04518 Integrin signaling
108933153
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108933153
09142 Cell motility
04820 Cytoskeleton in muscle cells
108933153
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
108933153
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sfm04147
]
108933153
00536 Glycosaminoglycan binding proteins [BR:
sfm00536
]
108933153
Exosome [BR:
sfm04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
108933153
Glycosaminoglycan binding proteins [BR:
sfm00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108933153
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
108933153
NCBI-ProteinID:
XP_018605505
LinkDB
All DBs
Position
1:complement(24369630..24414538)
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AA seq
1640 aa
AA seq
DB search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NT seq
4923 nt
NT seq
+upstream
nt +downstream
nt
atggtgcccgtgaagagcttctggcttcttctctccatacttctctgcaagacagactgg
tccggggctgcgggctgctcaggatcatcgtgcggcagttgcgattgcagcggcgtgaag
gggtcaaagggtgaacgaggacttcccggcctgcagggcaacatgggatttcctggaatg
caagggcctgaaggaccgccaggacagattggaccaaagggtgaccgcggagaaccaggc
gcatctggacacaaaggaacaaggggtcctcctggtgctgcagggttcccaggaaatcca
ggacttccaggaatcccaggtcaagacggccccccaggaccaccgggcatcccaggctgc
aatgggacaaagggagaacatggattacctggaatctcgggagaacctggcttgcggggc
ccacctggtatccctggaattccaggaatgaagggtgatcctggtggtttaattggaggc
ttcatccctctgaagggtgagaaaggatcgcctggaaatccaggtctgttggggcaacct
gggatgccagggacctctggtccatttggaccaccagggccagcgggagtccaagggcct
ccaggaccgccgggtccaccaggagagccgtacaacgtgacgttcagtggggagaagggg
cagaagggtgagagaggagttacaggaccccccggacccccaggacagtttgatggcaca
gaaacaccggggccaatctacataagaccgggacccaagggtgacacaggtgaacgtggc
gagaaaggagagaagggctactgtttgccatatgcaaatggcgtcaaaggtgaacctggc
ccacaaggacccaggggcaaacctggtaaagatggagagaagggcagcaaaggggatcaa
ggttttcatggtgatcctggatatgacggacggccgggtgaaaaaggagaaaaaggtctc
cctggatatggtggtggtgctccaggtcctgcaggacctcctggacccccaggcttgaaa
ggagagcgaggtttccctggttttccaggagaccctggtcctccagggagacacattgaa
ggacctcctggagaaattggattccctggggagattggacagaagggtgacaagggtgct
gccggtttaccactacgtggcccaggaggtcaacctggacttcctggacaacctggccct
cctggacctccaggggacggagagtgtgatattcaacacggaccaccagggcccccaggt
ccaccaggtctccagggagaggtgggacaaaaaggggaccaaggagatgtttgtgtggat
tgtgtagcttttggacctcctggacctcctggccctccagggccatctggaaagcaaggt
tatcctggaacccccggatcaaaaggagagaggggccaatcggggcctcgtggtcctcaa
ggcaatcctggattagatggtgccccaggcttaatgggtcaaccaggtgcccaaggagaa
ccaggcgacatctatgtcgccccagggctgaaaggagacaagggcaggccaggcatccct
ggagatagaggactaccaggagtagatggagtcccggggcgacacggcttacccggtgtg
ccaggactcaaaggagaagcggcaacttttggtattaaaggagaaaaaggtgaagttgga
cgacctggttatagtggacccccaggagagagaggtcctccaggtgttccagggaatggt
cttcctggtgcacctggagaaaaaggcagtcgtggtgagccaggaagaccaggagtacca
ggaataataggtcccaaaggggaaccggggaaaggtgtcagtataccaggtccacaaggt
accccaggacccagaggagacacaggaaggcctgggatacagggtgaccgaggacctcag
ggtaccccaggctttcctggccttcaaggaaagaaaggtgagataggccacccaggcatc
ggactgcctggccttcctggaccgaaaggacactcgggaatcccaggggcacctggcctg
cctggtgagccaggtctgcctgggattgatggtgcatctggatatccaggtcgtcctggg
caaaagggtgaaccagggaggggtcttcctgggcctaagggctctatggggccaaagggg
gtaactggctttccaggagataaaggcaacaccggtcatcctggcatcccaggacaggag
gggctgacaggtcttcctggacctcagggaaatagaggtgatcctggaccccctgggtca
catggattaccaggcccaccaggcccaccaggactaggagcgcctggaccacaaggaccc
atgggacccccgggttttccaggacccttcggaccatctggagagaagggcgtgaagggg
gaccctggcttccctggcctggacatgcctggaccacagggagagaaaggtgacgcagga
ctccctggatttcctggagcaaaggggataaagggtcaaccaggccctgttggccaagat
ggggtgccaggccagaaaggttccaaaggagagataggattcattggaacaccaggattt
cctggacctccgggctccactggagatcctggcgttcctggaccaagaggtgaccctggt
ttgattggaatacggggtgaaactggtcatcaggggcccaaaggagatcgaggagatcct
ggcctacagggacctgcaggaaacatgactgatgcagacatggaacacctgaaaggcgat
aaaggtgacagtggtgacagaggtgatcctggactaacgggagagaaaggatttcctggg
gaatctggaaaacctggaatgccaggaaaggatggaatgccaggtttacctggtcaacaa
ggtgagaaaggtgacataggagaccctggagaacctggaagaactggatatcctggacag
aaaggcatcataggagaaatgggaattccaggttctgttggaccaaagggctctaaaggg
gtaggtggtaccccaggtcaccctggttttccagggtccaccggggtgaagggggagaag
ggagtccctggcagtccaggtgttgggatacagggacctccaggagagaagggtaatatc
ggtctaccaggcatcactgggacccaaggagagaaaggccaaaaaggtgtaatgggtgtc
ccaggaaagccaggcacatttggacttaagggcgatagaggctatgatggttttcaaggt
agccctggacaaccaggtggcaaaggagaccctgggctgcatgggctgccgggagatccg
ggtttaccaggcagaccaggtgaaccaggtctacagggcccacctggtcctcaaggggag
aagggtcaggctggtatagatggaataccagggtcctcaggggaacggggtgaaccaggt
gcacctggaagaggcttccctggatcacccggtcagcctggcagtaaaggtgacaaaggc
agtgatgggcttccaggggccccaggcattcctggtgttcctggattgaaaggtgataag
ggcttggcgggagatcagggtcgccagggtccaccaggggagaggggcctaccagggcag
tcaatggaagggcccaagggtgacagaggagtcccaggaggggcaggagaaagaggtgca
cccggagccccaggcctacctggagttcctggaagcaccggagccaaaggtgaaaaagga
ggcgagggcttccaggggcccacagggcaaccggggtacaagggggaaaaaggacctcct
ggacttcctggaatacctggcctgccggggtacaatggaggaaagggggagacgggattg
caaggtcctcctggattcccaggaatgaagggtgactctggttttatgggaaacaaagga
gagcaaggagacagaggtttccctggaatcaaaggtaatgatgggcctccaggaccacct
ggtcccacagtgttaattaagggggatatcggcttcccagggcatcaagggccacagggt
ccccaaggacttccgggactttcgggagttaagggcctgcaaggtgtgaccggaccaaag
ggcataaaaggagaagaagggcagcctggatatgatggccgacccgggatgaagggcgag
ccagggcccattgggccttctggtcccaggggctatcccggccccccagggccagatggt
cagcctgggcaggtggggcccccaggaccctcatccatggatcatggcttcctggtgaca
cggcatagccagtcagtggaagtgcccttctgcccagagggaacgaggttgatctatgat
gggtattccctcttgtacgtgcagggcaacgagcgttcacatggacaggacttgggaaca
gcagggagctgcctgagaaagttcagccccatgcctttcctgttctgcaacatcaacaac
gtgtgcaactttgcatcaaggaatgactactcctactggctgacttctcctgaacccatg
cctatgagcatggcacccatcactggcgaaagcattaagcccttcattagcaggtgtgct
gtatgtgaggcccctgccatggtgattgcagtacacagccagtctattcgtatccctccc
tgccctcagggatgggactccctgtggattggctactcctttgtcatgcacaccagtgca
ggagcagagggttctggtcaggcactggcctctcctggctcgtgtctggaggaattccgc
agcgcccccttcatcgagtgccacggacgcggtacctgcaactactacgccaactcctac
agcttctggctggccaccatcgaggaccatgacatgtttacgaaacctgtccccgcaacg
ctaaaagcaggaagcttacgaacccacatcagcaggtgccaggtctgcatgaagaggaca
taa
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