Scleropages formosus (Asian bonytongue): 108933153
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Entry
108933153 CDS
T04919
Name
(RefSeq) collagen alpha-1(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
sfm
Scleropages formosus (Asian bonytongue)
Pathway
sfm04510
Focal adhesion
sfm04512
ECM-receptor interaction
sfm04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108933153
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108933153
09142 Cell motility
04820 Cytoskeleton in muscle cells
108933153
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sfm04147
]
108933153
00536 Glycosaminoglycan binding proteins [BR:
sfm00536
]
108933153
Exosome [BR:
sfm04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
108933153
Glycosaminoglycan binding proteins [BR:
sfm00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108933153
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
108933153
NCBI-ProteinID:
XP_018605505
LinkDB
All DBs
Position
1:complement(24369630..24414538)
Genome browser
AA seq
1640 aa
AA seq
DB search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NT seq
4923 nt
NT seq
+upstream
nt +downstream
nt
atggtgcccgtgaagagcttctggcttcttctctccatacttctctgcaagacagactgg
tccggggctgcgggctgctcaggatcatcgtgcggcagttgcgattgcagcggcgtgaag
gggtcaaagggtgaacgaggacttcccggcctgcagggcaacatgggatttcctggaatg
caagggcctgaaggaccgccaggacagattggaccaaagggtgaccgcggagaaccaggc
gcatctggacacaaaggaacaaggggtcctcctggtgctgcagggttcccaggaaatcca
ggacttccaggaatcccaggtcaagacggccccccaggaccaccgggcatcccaggctgc
aatgggacaaagggagaacatggattacctggaatctcgggagaacctggcttgcggggc
ccacctggtatccctggaattccaggaatgaagggtgatcctggtggtttaattggaggc
ttcatccctctgaagggtgagaaaggatcgcctggaaatccaggtctgttggggcaacct
gggatgccagggacctctggtccatttggaccaccagggccagcgggagtccaagggcct
ccaggaccgccgggtccaccaggagagccgtacaacgtgacgttcagtggggagaagggg
cagaagggtgagagaggagttacaggaccccccggacccccaggacagtttgatggcaca
gaaacaccggggccaatctacataagaccgggacccaagggtgacacaggtgaacgtggc
gagaaaggagagaagggctactgtttgccatatgcaaatggcgtcaaaggtgaacctggc
ccacaaggacccaggggcaaacctggtaaagatggagagaagggcagcaaaggggatcaa
ggttttcatggtgatcctggatatgacggacggccgggtgaaaaaggagaaaaaggtctc
cctggatatggtggtggtgctccaggtcctgcaggacctcctggacccccaggcttgaaa
ggagagcgaggtttccctggttttccaggagaccctggtcctccagggagacacattgaa
ggacctcctggagaaattggattccctggggagattggacagaagggtgacaagggtgct
gccggtttaccactacgtggcccaggaggtcaacctggacttcctggacaacctggccct
cctggacctccaggggacggagagtgtgatattcaacacggaccaccagggcccccaggt
ccaccaggtctccagggagaggtgggacaaaaaggggaccaaggagatgtttgtgtggat
tgtgtagcttttggacctcctggacctcctggccctccagggccatctggaaagcaaggt
tatcctggaacccccggatcaaaaggagagaggggccaatcggggcctcgtggtcctcaa
ggcaatcctggattagatggtgccccaggcttaatgggtcaaccaggtgcccaaggagaa
ccaggcgacatctatgtcgccccagggctgaaaggagacaagggcaggccaggcatccct
ggagatagaggactaccaggagtagatggagtcccggggcgacacggcttacccggtgtg
ccaggactcaaaggagaagcggcaacttttggtattaaaggagaaaaaggtgaagttgga
cgacctggttatagtggacccccaggagagagaggtcctccaggtgttccagggaatggt
cttcctggtgcacctggagaaaaaggcagtcgtggtgagccaggaagaccaggagtacca
ggaataataggtcccaaaggggaaccggggaaaggtgtcagtataccaggtccacaaggt
accccaggacccagaggagacacaggaaggcctgggatacagggtgaccgaggacctcag
ggtaccccaggctttcctggccttcaaggaaagaaaggtgagataggccacccaggcatc
ggactgcctggccttcctggaccgaaaggacactcgggaatcccaggggcacctggcctg
cctggtgagccaggtctgcctgggattgatggtgcatctggatatccaggtcgtcctggg
caaaagggtgaaccagggaggggtcttcctgggcctaagggctctatggggccaaagggg
gtaactggctttccaggagataaaggcaacaccggtcatcctggcatcccaggacaggag
gggctgacaggtcttcctggacctcagggaaatagaggtgatcctggaccccctgggtca
catggattaccaggcccaccaggcccaccaggactaggagcgcctggaccacaaggaccc
atgggacccccgggttttccaggacccttcggaccatctggagagaagggcgtgaagggg
gaccctggcttccctggcctggacatgcctggaccacagggagagaaaggtgacgcagga
ctccctggatttcctggagcaaaggggataaagggtcaaccaggccctgttggccaagat
ggggtgccaggccagaaaggttccaaaggagagataggattcattggaacaccaggattt
cctggacctccgggctccactggagatcctggcgttcctggaccaagaggtgaccctggt
ttgattggaatacggggtgaaactggtcatcaggggcccaaaggagatcgaggagatcct
ggcctacagggacctgcaggaaacatgactgatgcagacatggaacacctgaaaggcgat
aaaggtgacagtggtgacagaggtgatcctggactaacgggagagaaaggatttcctggg
gaatctggaaaacctggaatgccaggaaaggatggaatgccaggtttacctggtcaacaa
ggtgagaaaggtgacataggagaccctggagaacctggaagaactggatatcctggacag
aaaggcatcataggagaaatgggaattccaggttctgttggaccaaagggctctaaaggg
gtaggtggtaccccaggtcaccctggttttccagggtccaccggggtgaagggggagaag
ggagtccctggcagtccaggtgttgggatacagggacctccaggagagaagggtaatatc
ggtctaccaggcatcactgggacccaaggagagaaaggccaaaaaggtgtaatgggtgtc
ccaggaaagccaggcacatttggacttaagggcgatagaggctatgatggttttcaaggt
agccctggacaaccaggtggcaaaggagaccctgggctgcatgggctgccgggagatccg
ggtttaccaggcagaccaggtgaaccaggtctacagggcccacctggtcctcaaggggag
aagggtcaggctggtatagatggaataccagggtcctcaggggaacggggtgaaccaggt
gcacctggaagaggcttccctggatcacccggtcagcctggcagtaaaggtgacaaaggc
agtgatgggcttccaggggccccaggcattcctggtgttcctggattgaaaggtgataag
ggcttggcgggagatcagggtcgccagggtccaccaggggagaggggcctaccagggcag
tcaatggaagggcccaagggtgacagaggagtcccaggaggggcaggagaaagaggtgca
cccggagccccaggcctacctggagttcctggaagcaccggagccaaaggtgaaaaagga
ggcgagggcttccaggggcccacagggcaaccggggtacaagggggaaaaaggacctcct
ggacttcctggaatacctggcctgccggggtacaatggaggaaagggggagacgggattg
caaggtcctcctggattcccaggaatgaagggtgactctggttttatgggaaacaaagga
gagcaaggagacagaggtttccctggaatcaaaggtaatgatgggcctccaggaccacct
ggtcccacagtgttaattaagggggatatcggcttcccagggcatcaagggccacagggt
ccccaaggacttccgggactttcgggagttaagggcctgcaaggtgtgaccggaccaaag
ggcataaaaggagaagaagggcagcctggatatgatggccgacccgggatgaagggcgag
ccagggcccattgggccttctggtcccaggggctatcccggccccccagggccagatggt
cagcctgggcaggtggggcccccaggaccctcatccatggatcatggcttcctggtgaca
cggcatagccagtcagtggaagtgcccttctgcccagagggaacgaggttgatctatgat
gggtattccctcttgtacgtgcagggcaacgagcgttcacatggacaggacttgggaaca
gcagggagctgcctgagaaagttcagccccatgcctttcctgttctgcaacatcaacaac
gtgtgcaactttgcatcaaggaatgactactcctactggctgacttctcctgaacccatg
cctatgagcatggcacccatcactggcgaaagcattaagcccttcattagcaggtgtgct
gtatgtgaggcccctgccatggtgattgcagtacacagccagtctattcgtatccctccc
tgccctcagggatgggactccctgtggattggctactcctttgtcatgcacaccagtgca
ggagcagagggttctggtcaggcactggcctctcctggctcgtgtctggaggaattccgc
agcgcccccttcatcgagtgccacggacgcggtacctgcaactactacgccaactcctac
agcttctggctggccaccatcgaggaccatgacatgtttacgaaacctgtccccgcaacg
ctaaaagcaggaagcttacgaacccacatcagcaggtgccaggtctgcatgaagaggaca
taa
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